y
Basic Information | |
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Species | Manihot esculenta |
Cazyme ID | cassava4.1_020968m |
Family | PL1 |
Protein Properties | Length: 448 Molecular Weight: 50378.5 Isoelectric Point: 9.6664 |
Chromosome | Chromosome/Scaffold: 12542 Start: 85570 End: 87507 |
Description | Pectate lyase family protein |
View CDS |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 161 | 367 | 0 |
IQKEPLWIIFARDMNIKLSKELIVNDNKTIDGRGANVHIAYGAGITIQFVSNVIIHGIRIHHIGPASGGMIRDAPDHCGLRTQSDGDGISIFGSSNIWID HVSMSRCHDGLIDAIQGSTGITISNSHFTHHNDVILLGASDSFSGDQFMQVTVAFNHFGQGLVQRMPRCRWGFFHVVNNDYTHWQLYAIGGSMHPTIISQ GNKFIAP |
Full Sequence |
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Protein Sequence Length: 448 Download |
MEVANKLVLI FVVSFVIIIP YLEAADMVQY DDVWKRRAQE AKKNMMITYI PNPLEWKNET 60 WDSSKNGTRD SGTEKEMNES RRNLRQGKTL YKGPCHATNP IDRCWRCKDN WSNQRKRLAE 120 CGLGFGRRAV GGKAGKIYEV TNNRDDNVAE PIPGTLRHAV IQKEPLWIIF ARDMNIKLSK 180 ELIVNDNKTI DGRGANVHIA YGAGITIQFV SNVIIHGIRI HHIGPASGGM IRDAPDHCGL 240 RTQSDGDGIS IFGSSNIWID HVSMSRCHDG LIDAIQGSTG ITISNSHFTH HNDVILLGAS 300 DSFSGDQFMQ VTVAFNHFGQ GLVQRMPRCR WGFFHVVNND YTHWQLYAIG GSMHPTIISQ 360 GNKFIAPNNI YLKQVTKRDY ATEAEWKKWI WRSEGDLFMN GAYFVESGQK LSTTPSKKYL 420 IKAKPGVYAS KITRFAGALD CKRGKKC* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam04431 | Pec_lyase_N | 0.001 | 30 | 84 | 55 | + Pectate lyase, N terminus. This region is found N terminal to the pectate lyase domain (pfam00544) in some plant pectate lyase enzymes. | ||
COG3866 | PelB | 6.0e-23 | 180 | 438 | 279 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 1.0e-55 | 163 | 364 | 210 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 1.0e-65 | 173 | 368 | 207 | + Amb_all domain. |
Gene Ontology | |
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GO Term | Description |
GO:0030570 | pectate lyase activity |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN79927.1 | 0 | 17 | 447 | 19 | 439 | hypothetical protein [Vitis vinifera] |
RefSeq | XP_002306040.1 | 0 | 6 | 447 | 5 | 432 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002311599.1 | 0 | 11 | 447 | 1 | 429 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002323835.1 | 0 | 30 | 447 | 28 | 452 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002520133.1 | 0 | 1 | 447 | 1 | 440 | Pectate lyase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 99 | 439 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 99 | 439 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1vbl_A | 1e-17 | 182 | 364 | 128 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
PDB | 3zsc_A | 7e-17 | 180 | 366 | 62 | 248 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1pcl_A | 0.00000000000001 | 131 | 368 | 21 | 280 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |