| Basic Information | |
|---|---|
| Species | Manihot esculenta |
| Cazyme ID | cassava4.1_021247m |
| Family | GH28 |
| Protein Properties | Length: 418 Molecular Weight: 45126.4 Isoelectric Point: 6.1335 |
| Chromosome | Chromosome/Scaffold: 05335 Start: 457411 End: 460423 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 97 | 389 | 0 |
| YGAKGDGHTDDTKLDGKIIAPTTPGSWESELLQWIEFTTIKGITIKGKGVIDGQGSVWWNDLPTHSPDSKALRFYGSTDVTVTGITIQNSPQTHLKFDNC TSVQVYGFTAASPGNSPHTDGIHLQNSQDVLIYGTDLACAFTGDDCISIQTGCSNVYIHNVNCGPGHGISIGGLGKDNTKACVSNVTVRDIAIQDTLTGG GSGSVQGITFSNIQVSRVETPIMIDQFYCDSSKCSNESSAVAVSNINYADIKGTYTRNPIHFACSDNLPCTGVSLDTIELKSVGEDSQPFCWN | |||
| Full Sequence |
|---|
| Protein Sequence Length: 418 Download |
| MGGFNLENIS LITILIILLF VWSSRFEPCH ARQGKYWRQS KTAPADSQFL QKEKLHGVSH 60 HHSSSLTKFM DSYYISPDET METHKGQSSA TFNVLDYGAK GDGHTDDTKL DGKIIAPTTP 120 GSWESELLQW IEFTTIKGIT IKGKGVIDGQ GSVWWNDLPT HSPDSKALRF YGSTDVTVTG 180 ITIQNSPQTH LKFDNCTSVQ VYGFTAASPG NSPHTDGIHL QNSQDVLIYG TDLACAFTGD 240 DCISIQTGCS NVYIHNVNCG PGHGISIGGL GKDNTKACVS NVTVRDIAIQ DTLTGGGSGS 300 VQGITFSNIQ VSRVETPIMI DQFYCDSSKC SNESSAVAVS NINYADIKGT YTRNPIHFAC 360 SDNLPCTGVS LDTIELKSVG EDSQPFCWNT YGDLKGTTVP PINCLQSGKS SKKVVYC* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03010 | PLN03010 | 6.0e-42 | 92 | 393 | 359 | + polygalacturonase | ||
| PLN02218 | PLN02218 | 1.0e-49 | 146 | 403 | 272 | + polygalacturonase ADPG | ||
| pfam00295 | Glyco_hydro_28 | 2.0e-50 | 109 | 389 | 293 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02793 | PLN02793 | 3.0e-59 | 87 | 410 | 385 | + Probable polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAO24262.1 | 0 | 2 | 410 | 4 | 467 | putative style polygalacturonase [Turnera subulata] |
| GenBank | ABD62081.1 | 0 | 2 | 410 | 4 | 467 | putative style polygalacturonase [Turnera subulata] |
| DDBJ | BAH56488.1 | 0 | 10 | 409 | 9 | 494 | polygalacturonase 1 [Prunus persica] |
| RefSeq | XP_002298533.1 | 0 | 81 | 417 | 1 | 386 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002521450.1 | 0 | 23 | 415 | 22 | 463 | Polygalacturonase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1nhc_F | 4e-16 | 139 | 362 | 72 | 305 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 4e-16 | 139 | 362 | 72 | 305 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 4e-16 | 139 | 362 | 72 | 305 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_C | 4e-16 | 139 | 362 | 72 | 305 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_B | 4e-16 | 139 | 362 | 72 | 305 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
