| Basic Information | |
|---|---|
| Species | Manihot esculenta |
| Cazyme ID | cassava4.1_021251m |
| Family | PL4 |
| Protein Properties | Length: 629 Molecular Weight: 71960 Isoelectric Point: 5.1083 |
| Chromosome | Chromosome/Scaffold: 03961 Start: 34993 End: 38259 |
| Description | Rhamnogalacturonate lyase family protein |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| PL4 | 1 | 608 | 0 |
| VIIDNGLVRVTFSSPGGDVVGIKYNGIDNVLEIINEDDNRGYWDVVWNRPGESNIYDKLQATDFNVIMENEDQVEISFSKKWSPSMGKSTVPLNIDKSII NSFISIRYIIRRGNSGLYLYTILERLEGWPDVDMDQIRVVFKLQKEKFHFMAVSDDRQRVMPMPEDRLTGLPLAYPEAVLLTDPINPDLRGEVDDKYQYS SKVKDNAVHGWISENPPVGFWMITPSNEFRVGGPFKQELTSHVGPTVLNMFTSTHYAGKDLNTAYRNGEPWKKVLGPVYVYLNSISASEDPEALWENAKE QMSTEVRSWPYSFPQSEDFPTSYQRGNVLGQLIVRDRYMNERLMYANSAYVGLATPGDVGSWQMESKGYQFWTQADRKGIFSINNVRAGNYSLYAWVPGI IGDYKYNFNIIIEPGSNIKLGVLIYDPPRNGPTLWEIGIPDRTASEFYIPDTYPTLMNKLYTNHPTNKFRQYGLWERYADIYPKSDLIYNVGVNNYDQDW FFAHVTREKGNKTYEPTTWQIIFELKSVNQSGNYTLQVALASATMSELQVRVNTANSNRPLFTTGLIGRDNAIARHGIHGLYWLYSIQVPSSQLFQGNNI IYLTQSRS | |||
| Full Sequence |
|---|
| Protein Sequence Length: 629 Download |
| VIIDNGLVRV TFSSPGGDVV GIKYNGIDNV LEIINEDDNR GYWDVVWNRP GESNIYDKLQ 60 ATDFNVIMEN EDQVEISFSK KWSPSMGKST VPLNIDKSII NSFISIRYII RRGNSGLYLY 120 TILERLEGWP DVDMDQIRVV FKLQKEKFHF MAVSDDRQRV MPMPEDRLTG LPLAYPEAVL 180 LTDPINPDLR GEVDDKYQYS SKVKDNAVHG WISENPPVGF WMITPSNEFR VGGPFKQELT 240 SHVGPTVLNM FTSTHYAGKD LNTAYRNGEP WKKVLGPVYV YLNSISASED PEALWENAKE 300 QMSTEVRSWP YSFPQSEDFP TSYQRGNVLG QLIVRDRYMN ERLMYANSAY VGLATPGDVG 360 SWQMESKGYQ FWTQADRKGI FSINNVRAGN YSLYAWVPGI IGDYKYNFNI IIEPGSNIKL 420 GVLIYDPPRN GPTLWEIGIP DRTASEFYIP DTYPTLMNKL YTNHPTNKFR QYGLWERYAD 480 IYPKSDLIYN VGVNNYDQDW FFAHVTREKG NKTYEPTTWQ IIFELKSVNQ SGNYTLQVAL 540 ASATMSELQV RVNTANSNRP LFTTGLIGRD NAIARHGIHG LYWLYSIQVP SSQLFQGNNI 600 IYLTQSRSNG PFYGIMYDYI RLEAPEET* 660 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| cd10316 | RGL4_M | 6.0e-29 | 324 | 423 | 100 | + Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle domain represented by this model and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
| cd10317 | RGL4_C | 7.0e-49 | 435 | 623 | 191 | + C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
| cd10320 | RGL4_N | 2.0e-66 | 1 | 287 | 293 | + N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
| pfam06045 | Rhamnogal_lyase | 3.0e-79 | 1 | 193 | 195 | + Rhamnogalacturonate lyase family. Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | NP_179847.1 | 0 | 1 | 628 | 62 | 677 | lyase [Arabidopsis thaliana] |
| RefSeq | XP_002308510.1 | 0 | 1 | 628 | 57 | 674 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002319997.1 | 0 | 1 | 628 | 1 | 620 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002527229.1 | 0 | 1 | 627 | 54 | 669 | lyase, putative [Ricinus communis] |
| RefSeq | XP_002527245.1 | 0 | 1 | 628 | 2 | 621 | lyase, putative [Ricinus communis] |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| DY969340 | 323 | 221 | 543 | 0 |
| EH792178 | 287 | 298 | 582 | 0 |
| EE260349 | 253 | 377 | 629 | 0 |
| GW864372 | 311 | 139 | 447 | 0 |
| JG640880 | 273 | 147 | 417 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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