| Basic Information | |
|---|---|
| Species | Manihot esculenta |
| Cazyme ID | cassava4.1_021266m |
| Family | PL4 |
| Protein Properties | Length: 425 Molecular Weight: 48538.6 Isoelectric Point: 5.1641 |
| Chromosome | Chromosome/Scaffold: 08994 Start: 164113 End: 167484 |
| Description | Rhamnogalacturonate lyase family protein |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| PL4 | 1 | 258 | 0 |
| VVMDNGILQVTISKPEGIVTGIRYNGISNLLEVRNDEPNGGYWDLVWSKEGSTGTTGTQNVIKGTNFKVIMENEEQVETSFTKLWDPSLEGQLAPLNIDK RFIMLRNSSGFYSYAIYEHLQEWPAFNVPQTRIVFKLRKDKFHYMVVADNRQRFMPLPEDRLPPRGKPLDVPEAVLLVDPVEPEFKGEVDDKYQYSCENR NLQVHGWICFDPPVGFWQITPSNEFRSGGPLKQNLTSHVEFYVPDPDPMYINKLYVNH | |||
| PL4 | 240 | 400 | 0 |
| EFYVPDPDPMYINKLYVNHPDRFRQYGLWTRYTDLYPDSDLVYTIGTSDYSKDWFYAQVPRKTGDGNYQGTTWQIKFRLENPNKSGTYNLRLALATANSA ELQVRINDPGTNLPLFSTGVIGHDNTITRHGIHGLYRLYSVEIPGAQLLEEDNTIFLTQTM | |||
| Full Sequence |
|---|
| Protein Sequence Length: 425 Download |
| VVMDNGILQV TISKPEGIVT GIRYNGISNL LEVRNDEPNG GYWDLVWSKE GSTGTTGTQN 60 VIKGTNFKVI MENEEQVETS FTKLWDPSLE GQLAPLNIDK RFIMLRNSSG FYSYAIYEHL 120 QEWPAFNVPQ TRIVFKLRKD KFHYMVVADN RQRFMPLPED RLPPRGKPLD VPEAVLLVDP 180 VEPEFKGEVD DKYQYSCENR NLQVHGWICF DPPVGFWQIT PSNEFRSGGP LKQNLTSHVE 240 FYVPDPDPMY INKLYVNHPD RFRQYGLWTR YTDLYPDSDL VYTIGTSDYS KDWFYAQVPR 300 KTGDGNYQGT TWQIKFRLEN PNKSGTYNLR LALATANSAE LQVRINDPGT NLPLFSTGVI 360 GHDNTITRHG IHGLYRLYSV EIPGAQLLEE DNTIFLTQTM VTSPFQAGIM YDYIRLEGPA 420 SSNS* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| cd10317 | RGL4_C | 1.0e-44 | 240 | 417 | 180 | + C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
| cd10320 | RGL4_N | 4.0e-59 | 1 | 240 | 243 | + N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
| pfam06045 | Rhamnogal_lyase | 3.0e-98 | 1 | 189 | 189 | + Rhamnogalacturonate lyase family. Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | XP_002301114.1 | 0 | 1 | 243 | 15 | 257 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002301114.1 | 0 | 237 | 424 | 450 | 636 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002527357.1 | 0 | 1 | 239 | 15 | 253 | lyase, putative [Ricinus communis] |
| RefSeq | XP_002527357.1 | 0 | 240 | 424 | 456 | 639 | lyase, putative [Ricinus communis] |
| RefSeq | XP_002527358.1 | 0 | 1 | 222 | 28 | 249 | lyase, putative [Ricinus communis] |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| FC887900 | 239 | 1 | 239 | 0 |
| DW479599 | 239 | 1 | 239 | 0 |
| DT552229 | 237 | 3 | 239 | 0 |
| DY293973 | 239 | 1 | 239 | 0 |
| DW479600 | 239 | 1 | 239 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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