y
Basic Information | |
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Species | Manihot esculenta |
Cazyme ID | cassava4.1_021446m |
Family | GH28 |
Protein Properties | Length: 417 Molecular Weight: 45422.5 Isoelectric Point: 5.7378 |
Chromosome | Chromosome/Scaffold: 07571 Start: 515156 End: 516845 |
Description | Pectin lyase-like superfamily protein |
View CDS |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 47 | 372 | 0 |
TACQVDSAVIHIPYGFKFMIQSTIFTGPCQAGLRFQVDGTLMPPDGPDSWPKKNSKRQWLVFYRITMMSLVGGGVIDGRGQKWWDLPCKPHKGVNGTTLP GPCDSPIAIRFFMSSNLTVQGLRIKNSPQFNFRFDNCKNVHIKSIHITAPALSPNTDGIHIENTNNVEIYDSVFSNGDDCISIGSGCYDVDIRNVTCGPS HGISIGSLGNHNSPACVSNITVRDSVIKVSDNGVRIKTWQGGSGAVSGIIFSNIHMDNVRNPIIIDQFYCLTKECSNQTSAVFVSDILYENIKGTYNIRS PPMHFACSDTVPCTNLTLSDVELLPA |
Full Sequence |
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Protein Sequence Length: 417 Download |
MPPTSSPEPA NPPDDGHNYG VFDVRKFGAV GDGITDDTDA FKMAWETACQ VDSAVIHIPY 60 GFKFMIQSTI FTGPCQAGLR FQVDGTLMPP DGPDSWPKKN SKRQWLVFYR ITMMSLVGGG 120 VIDGRGQKWW DLPCKPHKGV NGTTLPGPCD SPIAIRFFMS SNLTVQGLRI KNSPQFNFRF 180 DNCKNVHIKS IHITAPALSP NTDGIHIENT NNVEIYDSVF SNGDDCISIG SGCYDVDIRN 240 VTCGPSHGIS IGSLGNHNSP ACVSNITVRD SVIKVSDNGV RIKTWQGGSG AVSGIIFSNI 300 HMDNVRNPII IDQFYCLTKE CSNQTSAVFV SDILYENIKG TYNIRSPPMH FACSDTVPCT 360 NLTLSDVELL PAQGDLVLDP FCWNAYGKLQ TLTIPPVSCL MDGAPRSMLD NDMDHC* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03003 | PLN03003 | 2.0e-81 | 22 | 400 | 386 | + Probable polygalacturonase At3g15720 | ||
PLN02188 | PLN02188 | 1.0e-84 | 15 | 396 | 389 | + polygalacturonase/glycoside hydrolase family protein | ||
pfam00295 | Glyco_hydro_28 | 1.0e-91 | 69 | 369 | 301 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 1.0e-101 | 24 | 369 | 350 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 1.0e-122 | 21 | 402 | 385 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI37004.1 | 0 | 10 | 416 | 74 | 484 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002272733.1 | 0 | 10 | 416 | 55 | 456 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002302793.1 | 0 | 15 | 416 | 59 | 457 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002320271.1 | 0 | 16 | 416 | 37 | 438 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002515219.1 | 0 | 14 | 416 | 132 | 537 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1nhc_F | 8e-27 | 79 | 369 | 36 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 8e-27 | 79 | 369 | 36 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 8e-27 | 79 | 369 | 36 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 8e-27 | 79 | 369 | 36 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_B | 8e-27 | 79 | 369 | 36 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
DW479564 | 324 | 26 | 349 | 0 |
DR450143 | 293 | 66 | 358 | 0 |
DY277859 | 353 | 21 | 370 | 0 |
CX663441 | 276 | 132 | 407 | 0 |
ES849368 | 296 | 67 | 360 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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