| Basic Information | |
|---|---|
| Species | Manihot esculenta |
| Cazyme ID | cassava4.1_021791m |
| Family | GH28 |
| Protein Properties | Length: 254 Molecular Weight: 27775.8 Isoelectric Point: 9.3736 |
| Chromosome | Chromosome/Scaffold: 10087 Start: 3141 End: 3996 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 7 | 243 | 0 |
| SCARFNFVTNSIVEDVTSIDSKQFHVNLLDSKNLTFQRFSVKVPGHSPNTNGIHIGRSEEINIINSNIITGDDCISIGRGSRQVQITNVRCGHGHGISIG SLGKYKKEEPVSGIYVKNCTIYDTDNGVRIKTWLALHGGSVSNIQFEDIVMQNVSNPIIIDQMYCPNNECNRKIPSKVKISDVIFKNIRGSSRTPTAVQL TCSSSVPCKNVELSNVNLQYTGSKGPAKSICTNVKPK | |||
| Full Sequence |
|---|
| Protein Sequence Length: 254 Download |
| MFSVCPSCAR FNFVTNSIVE DVTSIDSKQF HVNLLDSKNL TFQRFSVKVP GHSPNTNGIH 60 IGRSEEINII NSNIITGDDC ISIGRGSRQV QITNVRCGHG HGISIGSLGK YKKEEPVSGI 120 YVKNCTIYDT DNGVRIKTWL ALHGGSVSNI QFEDIVMQNV SNPIIIDQMY CPNNECNRKI 180 PSKVKISDVI FKNIRGSSRT PTAVQLTCSS SVPCKNVELS NVNLQYTGSK GPAKSICTNV 240 KPKIIGKLIS RRC* 300 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02218 | PLN02218 | 1.0e-40 | 6 | 239 | 234 | + polygalacturonase ADPG | ||
| PLN02155 | PLN02155 | 3.0e-46 | 5 | 253 | 253 | + polygalacturonase | ||
| PLN02793 | PLN02793 | 1.0e-46 | 6 | 237 | 233 | + Probable polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 8.0e-74 | 6 | 241 | 236 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02188 | PLN02188 | 3.0e-79 | 4 | 253 | 251 | + polygalacturonase/glycoside hydrolase family protein | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| DDBJ | BAA89476.1 | 0 | 6 | 253 | 146 | 393 | polygalacturonase [Salix gilgiana] |
| DDBJ | BAA89477.1 | 0 | 6 | 253 | 146 | 393 | polygalacturonase [Salix gilgiana] |
| DDBJ | BAA89478.1 | 0 | 6 | 253 | 146 | 393 | polygalacturonase [Salix gilgiana] |
| RefSeq | XP_002310765.1 | 0 | 6 | 253 | 144 | 391 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002329175.1 | 0 | 6 | 253 | 146 | 393 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 4e-21 | 5 | 224 | 150 | 361 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1ib4_B | 2e-16 | 14 | 240 | 112 | 333 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1ib4_A | 2e-16 | 14 | 240 | 112 | 333 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1ia5_A | 2e-16 | 14 | 240 | 112 | 333 | A Chain A, Polygalacturonase From Aspergillus Aculeatus |
| PDB | 2iq7_G | 4e-16 | 51 | 240 | 151 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
| Hydropathy |
|---|
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| EE257565 | 226 | 19 | 244 | 0 |
| GR453460 | 249 | 6 | 253 | 0 |
| EC947475 | 237 | 17 | 253 | 0 |
| EC939231 | 237 | 17 | 253 | 0 |
| EY196848 | 238 | 10 | 247 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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