| Basic Information | |
|---|---|
| Species | Manihot esculenta |
| Cazyme ID | cassava4.1_021864m |
| Family | GH28 |
| Protein Properties | Length: 281 Molecular Weight: 30965.3 Isoelectric Point: 9.2954 |
| Chromosome | Chromosome/Scaffold: 04124 Start: 6381 End: 9897 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 2 | 275 | 0 |
| CKGAMHLQVEGTLVAPAKASQHRKNSWVTLRYLDRLTRKSCGGECNKALPVNIRFDFVTNSIVEDMTSTDSKQFHVNLLGSKNLTFQRFSVKAPGHSLNT DGIHIGQSEEINIINSNIITGDDCISIGRGSRQVRITNVRCGHGHGISIGSLGKYEKEEPVSGIYVKNCTIYDTDNGMRIKTWPALYGGSVSNIHFKDIV MHNVSNPIIIDQMYCPHNECNRKMPSKVKISDVIFKNIRGSSRTPTAVQLTCSSSVPCKNVELSNVNLQYTGSK | |||
| Full Sequence |
|---|
| Protein Sequence Length: 281 Download |
| PCKGAMHLQV EGTLVAPAKA SQHRKNSWVT LRYLDRLTRK SCGGECNKAL PVNIRFDFVT 60 NSIVEDMTST DSKQFHVNLL GSKNLTFQRF SVKAPGHSLN TDGIHIGQSE EINIINSNII 120 TGDDCISIGR GSRQVRITNV RCGHGHGISI GSLGKYEKEE PVSGIYVKNC TIYDTDNGMR 180 IKTWPALYGG SVSNIHFKDI VMHNVSNPII IDQMYCPHNE CNRKMPSKVK ISDVIFKNIR 240 GSSRTPTAVQ LTCSSSVPCK NVELSNVNLQ YTGSKGPDKS I 300 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02218 | PLN02218 | 1.0e-43 | 1 | 270 | 292 | + polygalacturonase ADPG | ||
| PLN02155 | PLN02155 | 2.0e-47 | 1 | 271 | 286 | + polygalacturonase | ||
| PLN02793 | PLN02793 | 3.0e-51 | 1 | 273 | 298 | + Probable polygalacturonase | ||
| PLN02188 | PLN02188 | 2.0e-75 | 1 | 276 | 300 | + polygalacturonase/glycoside hydrolase family protein | ||
| pfam00295 | Glyco_hydro_28 | 1.0e-75 | 1 | 275 | 291 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| DDBJ | BAA89476.1 | 0 | 1 | 280 | 79 | 375 | polygalacturonase [Salix gilgiana] |
| DDBJ | BAA89477.1 | 0 | 1 | 280 | 79 | 375 | polygalacturonase [Salix gilgiana] |
| DDBJ | BAA89478.1 | 0 | 1 | 280 | 79 | 375 | polygalacturonase [Salix gilgiana] |
| RefSeq | XP_002329175.1 | 0 | 1 | 280 | 79 | 375 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002526191.1 | 0 | 1 | 280 | 78 | 373 | Polygalacturonase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 3e-19 | 22 | 269 | 128 | 361 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1ib4_B | 1e-16 | 8 | 270 | 67 | 322 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1ib4_A | 1e-16 | 8 | 270 | 67 | 322 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1ia5_A | 1e-16 | 8 | 270 | 67 | 322 | A Chain A, Polygalacturonase From Aspergillus Aculeatus |
| PDB | 2iq7_G | 0.000000000000001 | 94 | 275 | 149 | 323 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
| Hydropathy |
|---|
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| GW611463 | 212 | 48 | 259 | 0 |
| EY196848 | 228 | 50 | 277 | 0 |
| EX164190 | 228 | 50 | 277 | 0 |
| EE257565 | 217 | 64 | 280 | 0 |
| EC944002 | 219 | 46 | 264 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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