| Basic Information | |
|---|---|
| Species | Manihot esculenta |
| Cazyme ID | cassava4.1_021918m |
| Family | CBM22 |
| Protein Properties | Length: 560 Molecular Weight: 62849.3 Isoelectric Point: 9.3444 |
| Chromosome | Chromosome/Scaffold: 00396 Start: 106002 End: 109268 |
| Description | Glycosyl hydrolase family 10 protein |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| CBM22 | 41 | 156 | 6.5e-22 |
| IIQNPDLNEGLKGWSTFGDAKIQHKELGNNAFIVANSRVHPYDSVSQKLNLQKDNLYTFSAWIQVSKGKVPVSALFKTQKGSTIAGTVIAESKCWSMLKG GFTVDASAAVQLYFES | |||
| GH10 | 217 | 482 | 0 |
| RASFPFGCAINKNILSNKAYQNWFTSRFSVTTFEDEMKWYSTESSQGKVDYSVPDAMLEFSKKNNIQVRGHNVLWEDPNYQSEWVKSLSPTDLSKAATNR INSIMSRYKGQLICWDVVNENLHFDFFESKLGNTASAVFYNLAQKIDGASTLFLNDFNTLEEERDDKSTPARYLQKLRDIKAFPGNQNLKLGIGLESHFS SSAPNLPYMRAAIDTLGATNLPIWLTEVDVQSSPNQAKYLEQILREAQSHPKVAGIVIWSAWKPQG | |||
| Full Sequence |
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| Protein Sequence Length: 560 Download |
| MLCPMITRLR TRLRVDLFRY TYHKIKFCLA SPQKPQYSGG IIQNPDLNEG LKGWSTFGDA 60 KIQHKELGNN AFIVANSRVH PYDSVSQKLN LQKDNLYTFS AWIQVSKGKV PVSALFKTQK 120 GSTIAGTVIA ESKCWSMLKG GFTVDASAAV QLYFESNDTS VDIWVDSVSL QPFTEKEWMS 180 HQDQGIEKNR KSKVRIQAVD GKGKPLSNAT ISVELRRASF PFGCAINKNI LSNKAYQNWF 240 TSRFSVTTFE DEMKWYSTES SQGKVDYSVP DAMLEFSKKN NIQVRGHNVL WEDPNYQSEW 300 VKSLSPTDLS KAATNRINSI MSRYKGQLIC WDVVNENLHF DFFESKLGNT ASAVFYNLAQ 360 KIDGASTLFL NDFNTLEEER DDKSTPARYL QKLRDIKAFP GNQNLKLGIG LESHFSSSAP 420 NLPYMRAAID TLGATNLPIW LTEVDVQSSP NQAKYLEQIL REAQSHPKVA GIVIWSAWKP 480 QGCYRMCLTD NNFKNLPTGD VVDKLLAAKS VVGRTDVDGF FEASLIHGDY RVKIQHPTAA 540 TSSFKKLNVV PSTGAATQTL |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam02018 | CBM_4_9 | 3.0e-5 | 39 | 160 | 133 | + Carbohydrate binding domain. This family includes diverse carbohydrate binding domains. | ||
| COG3693 | XynA | 1.0e-30 | 225 | 446 | 232 | + Beta-1,4-xylanase [Carbohydrate transport and metabolism] | ||
| pfam00331 | Glyco_hydro_10 | 2.0e-51 | 214 | 475 | 280 | + Glycosyl hydrolase family 10. | ||
| smart00633 | Glyco_10 | 9.0e-77 | 253 | 502 | 273 | + Glycosyl hydrolase family 10. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| GO:0016798 | hydrolase activity, acting on glycosyl bonds |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAN10199.1 | 0 | 13 | 543 | 25 | 559 | endoxylanase [Carica papaya] |
| EMBL | CBI22449.1 | 0 | 28 | 559 | 13 | 548 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002264652.1 | 0 | 15 | 559 | 26 | 574 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002313180.1 | 0 | 28 | 536 | 3 | 512 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002532418.1 | 0 | 20 | 552 | 23 | 557 | Endo-1,4-beta-xylanase C precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1nq6_A | 4e-30 | 222 | 502 | 15 | 298 | A Chain A, Crystal Structure Of The Catalytic Domain Of Xylanase A From Streptomyces Halstedii Jm8 |
| PDB | 1e0v_A | 2e-27 | 207 | 475 | 1 | 266 | A Chain A, Xylanase 10a From Sreptomyces Lividans. Cellobiosyl-Enzyme Intermediate At 1.7 A |
| PDB | 1v0n_A | 2e-27 | 207 | 475 | 1 | 266 | A Chain A, Xylanase 10a From Sreptomyces Lividans. Cellobiosyl-Enzyme Intermediate At 1.7 A |
| PDB | 1v0m_A | 2e-27 | 207 | 475 | 1 | 266 | A Chain A, Xylanase 10a From Sreptomyces Lividans. Cellobiosyl-Enzyme Intermediate At 1.7 A |
| PDB | 1v0l_A | 2e-27 | 207 | 475 | 1 | 266 | A Chain A, Xylanase 10a From Sreptomyces Lividans. Cellobiosyl-Enzyme Intermediate At 1.7 A |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| (1,4)-β-xylan degradation | 3.2.1.8-RXN | EC-3.2.1.8 | endo-1,4-β-xylanase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
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| Hit | Length | Start | End | EValue |
| EX266128 | 272 | 235 | 506 | 0 |
| AM722845 | 268 | 186 | 453 | 0 |
| GR150167 | 263 | 32 | 293 | 0 |
| GE471597 | 301 | 154 | 454 | 0 |
| EX266128 | 39 | 507 | 543 | 0.024 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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