| Basic Information | |
|---|---|
| Species | Manihot esculenta |
| Cazyme ID | cassava4.1_022005m |
| Family | GH28 |
| Protein Properties | Length: 325 Molecular Weight: 34353.1 Isoelectric Point: 8.6745 |
| Chromosome | Chromosome/Scaffold: 06780 Start: 35413 End: 36666 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 6 | 312 | 0 |
| NIVFQGPCKNGAILFRIVGTLVAPSDYRVIGNAGNWLLFQFVNGVTVYGGVLDGQGPALWACKASGRNCPTGATSLAFSNSNNIAISRLISLNSQMFHIV INGCHNVKVQGVTVSASGNSPNTDGIHVQLSSSVAILNSWIGTGDDCISIGAGTSNMWIERVACGPGHGISIGSLGKELQEPGVENVIVKSVVFTGTQNG LRIKSWARPSNGFVRNIRFQDAVMKNVQNPIIIDQNYCPNNINCPNQGSGIKVSDVAYHGIWGSSATPVAVKFDCSRKSPCTGIYLGDVNLTYRNQPSEA SCKNADG | |||
| Full Sequence |
|---|
| Protein Sequence Length: 325 Download |
| RFFLRNIVFQ GPCKNGAILF RIVGTLVAPS DYRVIGNAGN WLLFQFVNGV TVYGGVLDGQ 60 GPALWACKAS GRNCPTGATS LAFSNSNNIA ISRLISLNSQ MFHIVINGCH NVKVQGVTVS 120 ASGNSPNTDG IHVQLSSSVA ILNSWIGTGD DCISIGAGTS NMWIERVACG PGHGISIGSL 180 GKELQEPGVE NVIVKSVVFT GTQNGLRIKS WARPSNGFVR NIRFQDAVMK NVQNPIIIDQ 240 NYCPNNINCP NQGSGIKVSD VAYHGIWGSS ATPVAVKFDC SRKSPCTGIY LGDVNLTYRN 300 QPSEASCKNA DGVAIGFVQP SSCL* 360 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02218 | PLN02218 | 8.0e-77 | 2 | 320 | 328 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 2.0e-82 | 2 | 324 | 330 | + Probable polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 9.0e-88 | 2 | 310 | 311 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02188 | PLN02188 | 3.0e-94 | 2 | 323 | 329 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN02155 | PLN02155 | 2.0e-127 | 2 | 324 | 324 | + polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| DDBJ | BAF42034.1 | 0 | 1 | 324 | 75 | 398 | polygalacturonase3 [Pyrus communis] |
| RefSeq | XP_002309718.1 | 0 | 1 | 324 | 69 | 392 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002331621.1 | 0 | 2 | 324 | 74 | 396 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002529089.1 | 0 | 1 | 324 | 70 | 393 | Polygalacturonase precursor, putative [Ricinus communis] |
| RefSeq | XP_002529090.1 | 0 | 1 | 324 | 70 | 393 | Polygalacturonase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 7e-20 | 52 | 242 | 113 | 314 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1hg8_A | 0.000000000004 | 54 | 291 | 78 | 326 | A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme |
| PDB | 1czf_B | 0.00000000002 | 127 | 307 | 178 | 362 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
| PDB | 1czf_A | 0.00000000002 | 127 | 307 | 178 | 362 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
| PDB | 1nhc_F | 0.00000000003 | 54 | 307 | 77 | 336 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
| Hydropathy |
|---|
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| JZ191937 | 299 | 26 | 324 | 0 |
| JZ194028 | 289 | 19 | 307 | 0 |
| JZ192826 | 286 | 24 | 309 | 0 |
| JZ195553 | 270 | 11 | 280 | 0 |
| JZ192621 | 269 | 13 | 281 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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