| Basic Information | |
|---|---|
| Species | Manihot esculenta |
| Cazyme ID | cassava4.1_022207m |
| Family | GH28 |
| Protein Properties | Length: 156 Molecular Weight: 17253.8 Isoelectric Point: 9.02 |
| Chromosome | Chromosome/Scaffold: 09358 Start: 31710 End: 32409 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GH28 | 7 | 145 | 5.1e-28 |
| KEACSAKGSNRFVVPKGIYSIGLTDLNGPCKGAMELQVQGTLLAPINPSKYAKDSWITFAYIDQFKLSGGGTFDGQEQVAWKQNNCGRNPKCKRLPVSLR FDFITNNVVHDVISLDSKNFHVNVLGGKNLTFDRLICFS | |||
| Full Sequence |
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| Protein Sequence Length: 156 Download |
| ALLGAWKEAC SAKGSNRFVV PKGIYSIGLT DLNGPCKGAM ELQVQGTLLA PINPSKYAKD 60 SWITFAYIDQ FKLSGGGTFD GQEQVAWKQN NCGRNPKCKR LPVSLRFDFI TNNVVHDVIS 120 LDSKNFHVNV LGGKNLTFDR LICFSNSIHK IFNELD |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02218 | PLN02218 | 4.0e-15 | 1 | 107 | 113 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 2.0e-15 | 1 | 128 | 135 | + Probable polygalacturonase | ||
| PLN02155 | PLN02155 | 1.0e-15 | 1 | 136 | 137 | + polygalacturonase | ||
| PLN02188 | PLN02188 | 2.0e-32 | 1 | 141 | 142 | + polygalacturonase/glycoside hydrolase family protein | ||
| pfam00295 | Glyco_hydro_28 | 2.0e-33 | 10 | 142 | 133 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| DDBJ | BAA89476.1 | 0 | 1 | 141 | 45 | 185 | polygalacturonase [Salix gilgiana] |
| DDBJ | BAA89477.1 | 0 | 1 | 141 | 45 | 185 | polygalacturonase [Salix gilgiana] |
| DDBJ | BAA89478.1 | 0 | 1 | 141 | 45 | 185 | polygalacturonase [Salix gilgiana] |
| RefSeq | XP_002329175.1 | 0 | 1 | 141 | 45 | 185 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002333303.1 | 0 | 1 | 141 | 45 | 185 | predicted protein [Populus trichocarpa] |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
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| Hit | Length | Start | End | EValue |
| GW618604 | 140 | 2 | 141 | 0 |
| GW617460 | 140 | 2 | 141 | 0 |
| GW619601 | 138 | 5 | 142 | 0 |
| GW618827 | 135 | 2 | 136 | 0 |
| EE255109 | 148 | 1 | 148 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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