| Basic Information | |
|---|---|
| Species | Manihot esculenta |
| Cazyme ID | cassava4.1_022331m |
| Family | CE8 |
| Protein Properties | Length: 367 Molecular Weight: 40827 Isoelectric Point: 10.168 |
| Chromosome | Chromosome/Scaffold: 08806 Start: 8591 End: 9961 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CE8 | 71 | 356 | 0 |
| IIVSKDGKGEFKTVTDAINSVPPKNKQRVIIKIGPGVYIEKIQIERTKHFITFLGDPKAMPTLAFNGTAYEYGTLASASVAIESTYFMAVNIIFKNTAPG PDSKKPGAQAVALRVGGDKAAFYNCKIFGFQDTLCDDRGRHFYKNCYVQGTVDFIFGRGRSLYLESHINVVKRKGSTYITAQAKQNKTEVYGYSFVQCKI TGRGSRAYLGRAWRAMPEVVFSYTQMGAVIDPLGWSNNRLPERERTVFFAEYKNSGPGSNLKRRVKFAKKLTDREAKHFLSLGYIQ | |||
| Full Sequence |
|---|
| Protein Sequence Length: 367 Download |
| MARGRYIDAI YCVLIAIFVV ATTVSSDDIT PIPADDSKVS NWFQTNVKPW RSRKGTLDPA 60 LEAAEAKSKI IIVSKDGKGE FKTVTDAINS VPPKNKQRVI IKIGPGVYIE KIQIERTKHF 120 ITFLGDPKAM PTLAFNGTAY EYGTLASASV AIESTYFMAV NIIFKNTAPG PDSKKPGAQA 180 VALRVGGDKA AFYNCKIFGF QDTLCDDRGR HFYKNCYVQG TVDFIFGRGR SLYLESHINV 240 VKRKGSTYIT AQAKQNKTEV YGYSFVQCKI TGRGSRAYLG RAWRAMPEVV FSYTQMGAVI 300 DPLGWSNNRL PERERTVFFA EYKNSGPGSN LKRRVKFAKK LTDREAKHFL SLGYIQGSEW 360 LLPPPM* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02432 | PLN02432 | 9.0e-86 | 70 | 361 | 294 | + putative pectinesterase | ||
| PLN02671 | PLN02671 | 5.0e-88 | 68 | 361 | 310 | + pectinesterase | ||
| PLN02304 | PLN02304 | 1.0e-89 | 70 | 363 | 302 | + probable pectinesterase | ||
| PLN02682 | PLN02682 | 3.0e-112 | 10 | 363 | 367 | + pectinesterase family protein | ||
| PLN02665 | PLN02665 | 0 | 5 | 365 | 362 | + pectinesterase family protein | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0005618 | cell wall |
| GO:0030599 | pectinesterase activity |
| GO:0042545 | cell wall modification |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | XP_002309337.1 | 0 | 10 | 365 | 11 | 367 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002318197.1 | 0 | 7 | 365 | 4 | 363 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002333446.1 | 0 | 4 | 365 | 2 | 364 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002511045.1 | 0 | 6 | 365 | 7 | 365 | Pectinesterase-1 precursor, putative [Ricinus communis] |
| RefSeq | XP_002530224.1 | 0 | 1 | 365 | 1 | 366 | Pectinesterase U1 precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1gq8_A | 6.02558e-44 | 71 | 361 | 9 | 308 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 1xg2_A | 8.00001e-41 | 72 | 361 | 6 | 304 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 2ntq_B | 2e-20 | 74 | 349 | 12 | 328 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 2ntq_A | 2e-20 | 74 | 349 | 12 | 328 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 2ntp_B | 2e-20 | 74 | 349 | 12 | 328 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |
