y
Basic Information | |
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Species | Manihot esculenta |
Cazyme ID | cassava4.1_022396m |
Family | PL1 |
Protein Properties | Length: 396 Molecular Weight: 43378.6 Isoelectric Point: 9.2996 |
Chromosome | Chromosome/Scaffold: 11251 Start: 4851 End: 6409 |
Description | root hair specific 14 |
View CDS |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 109 | 311 | 0 |
QPLWIIFSKDMVITLKNELIMNSFKTIDGRGSKVEIAYGACITIQGVSHVIIHGISIHDCKPGGSGMVRSSPTHVGERRGSDGDGIAIFAASNVWIDHCY VAHCTDGLIDVIHASTGVTISNNYFAQHDKVMLLGHNDGYSADKVMKVTIAFNHFGTGLIERMPRVRFGYAHVANNRYDEWRMYAIGGSANPTIFSEGNY FIA |
Full Sequence |
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Protein Sequence Length: 396 Download |
MASLPSLHFL SYIVLCLALF SFQAHALDYK PLSIYLPSKT KTVLNIIDSC WRTKSNWASN 60 RRALADCAVG FGNGAVGGKY GSIYVVTSSY DDPVNPKPGT LRYGVIQTQP LWIIFSKDMV 120 ITLKNELIMN SFKTIDGRGS KVEIAYGACI TIQGVSHVII HGISIHDCKP GGSGMVRSSP 180 THVGERRGSD GDGIAIFAAS NVWIDHCYVA HCTDGLIDVI HASTGVTISN NYFAQHDKVM 240 LLGHNDGYSA DKVMKVTIAF NHFGTGLIER MPRVRFGYAH VANNRYDEWR MYAIGGSANP 300 TIFSEGNYFI APDDPSSKQV TKREGKSGWK NWKWRSSKDV FMNGAYFVQS GYGSIAPPYF 360 RTQRFPVAPG SMVPALTSDA GPLRCFVGKA CGYKY* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 8.0e-25 | 182 | 351 | 182 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 8.0e-57 | 124 | 309 | 209 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 5.0e-71 | 118 | 313 | 207 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_002263615.1 | 0 | 10 | 391 | 14 | 397 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002317128.1 | 0 | 1 | 391 | 1 | 382 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002317132.1 | 0 | 1 | 391 | 1 | 393 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002518441.1 | 0 | 20 | 391 | 4 | 377 | Pectate lyase precursor, putative [Ricinus communis] |
RefSeq | XP_002518442.1 | 0 | 23 | 394 | 22 | 393 | Pectate lyase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 45 | 381 | 2 | 343 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 45 | 381 | 2 | 343 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 3e-17 | 63 | 311 | 1 | 248 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1jta_A | 0.00000000000004 | 134 | 381 | 90 | 357 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1jrg_B | 0.00000000000004 | 134 | 381 | 90 | 357 | A Chain A, Crystal Structure Of The R3 Form Of Pectate Lyase A, Erwinia Chrysanthemi |