| Basic Information | |
|---|---|
| Species | Manihot esculenta |
| Cazyme ID | cassava4.1_022514m |
| Family | GH28 |
| Protein Properties | Length: 259 Molecular Weight: 27744.9 Isoelectric Point: 9.4821 |
| Chromosome | Chromosome/Scaffold: 11581 Start: 1079595 End: 1081069 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GH28 | 132 | 246 | 1.1e-31 |
| IFINTQNGFRIKSWARPSNGFVQRVRFLDAIMHNVQNPIIIDQNYCPHNLNCPNKVSGVKINDIIYQGIRGTSATSVAIKFDCSPKNPCSAIRLQNVNLT YSNQAAQSSCVNVVG | |||
| Full Sequence |
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| Protein Sequence Length: 259 Download |
| MARLVIFMFF VSFALHINSS FARSTFNVLS YGAKPNGATD STKAFLDAWA AACSSVGSTM 60 IYVPNGRYLL GPIIFRGACK SSDITIRIDG TLVAPGDYHI LGQAANWLSF EGVAGVSIVG 120 GALDAKGSPL TIFINTQNGF RIKSWARPSN GFVQRVRFLD AIMHNVQNPI IIDQNYCPHN 180 LNCPNKVSGV KINDIIYQGI RGTSATSVAI KFDCSPKNPC SAIRLQNVNL TYSNQAAQSS 240 CVNVVGKTIG LVKPDNCL* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02188 | PLN02188 | 2.0e-19 | 3 | 128 | 137 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN02155 | PLN02155 | 2.0e-27 | 19 | 128 | 110 | + polygalacturonase | ||
| PLN02793 | PLN02793 | 5.0e-28 | 135 | 258 | 125 | + Probable polygalacturonase | ||
| PLN02188 | PLN02188 | 4.0e-30 | 133 | 257 | 129 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN02155 | PLN02155 | 2.0e-45 | 94 | 258 | 166 | + polygalacturonase | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | XP_002315106.1 | 0 | 88 | 258 | 237 | 397 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002524365.1 | 0 | 7 | 130 | 4 | 127 | Polygalacturonase precursor, putative [Ricinus communis] |
| RefSeq | XP_002524365.1 | 0 | 88 | 258 | 227 | 387 | Polygalacturonase precursor, putative [Ricinus communis] |
| RefSeq | XP_002529088.1 | 0 | 4 | 258 | 7 | 306 | conserved hypothetical protein [Ricinus communis] |
| RefSeq | XP_002529093.1 | 0 | 26 | 258 | 30 | 319 | Polygalacturonase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1rmg_A | 0.002 | 22 | 96 | 17 | 86 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
| PDB | 1bhe_A | 0.003 | 136 | 244 | 275 | 374 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 3jur_D | 0.008 | 27 | 92 | 29 | 88 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 0.008 | 27 | 92 | 29 | 88 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 0.008 | 27 | 92 | 29 | 88 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
| Signal Peptide | ||||
|---|---|---|---|---|
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| Cleavage Site | ||||
| 22 | ||||
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
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| Hit | Length | Start | End | EValue |
| FG508808 | 172 | 88 | 259 | 0 |
| FG442012 | 178 | 81 | 258 | 0 |
| FG510212 | 171 | 88 | 258 | 0 |
| FG460456 | 172 | 88 | 259 | 0 |
| FG454372 | 170 | 88 | 257 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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