y
Basic Information | |
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Species | Manihot esculenta |
Cazyme ID | cassava4.1_022910m |
Family | GH28 |
Protein Properties | Length: 535 Molecular Weight: 58598.5 Isoelectric Point: 7.0118 |
Chromosome | Chromosome/Scaffold: 03055 Start: 72791 End: 76939 |
Description | Pectin lyase-like superfamily protein |
View CDS |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 143 | 488 | 0 |
AAACKVEASTMLVPAEFVFLVGPVSFSGPYCQENIVFQLDGTIIAPTNSNVWGKGLLWWIEFTKLKGITIQGTGTIDGSGSVWWQDYPFDDPIDDETKLI IPLNHTVEEHPPIPIRNEFSKKMPSIKPTALRFYGSFNALVTGITIQNSPQCHLKFDNCIGVVVHDINISSPGDSPNTDGIHLQNSKDVLIHSSNLACGD DCVSIQTGCTNVYIRDVNCGPGHGISIGSLGKDNTKACVSNITVRDVVMHNTMTGVRIKTWQGGSGSVQGILFSNIQVSEVQLPIVIDQFYCDKSTCRNQ TSAVSLSGINYEKIRGTYTVKPVHFACSDALPCIDVSLTTIELKPL |
Full Sequence |
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Protein Sequence Length: 535 Download |
MGAFSFKNIS FVLFIAFLVW SASFDTCIAR RSRHWRQNRA ASASLFQKGK SRDNNHNRHN 60 GGSKPKPEPP SHQSPLPPAS KPPKDDDPSS SSPVKGSAIF NVLDFGAKGD GKSDDTKVYT 120 PIPIYTFKLK FFELLLAFQS AWAAACKVEA STMLVPAEFV FLVGPVSFSG PYCQENIVFQ 180 LDGTIIAPTN SNVWGKGLLW WIEFTKLKGI TIQGTGTIDG SGSVWWQDYP FDDPIDDETK 240 LIIPLNHTVE EHPPIPIRNE FSKKMPSIKP TALRFYGSFN ALVTGITIQN SPQCHLKFDN 300 CIGVVVHDIN ISSPGDSPNT DGIHLQNSKD VLIHSSNLAC GDDCVSIQTG CTNVYIRDVN 360 CGPGHGISIG SLGKDNTKAC VSNITVRDVV MHNTMTGVRI KTWQGGSGSV QGILFSNIQV 420 SEVQLPIVID QFYCDKSTCR NQTSAVSLSG INYEKIRGTY TVKPVHFACS DALPCIDVSL 480 TTIELKPLQE QYHMYDPFCW QTFGELNTPT TPPIDCLQIG KPSSNRPQSD HDAC* 540 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03010 | PLN03010 | 3.0e-65 | 99 | 485 | 392 | + polygalacturonase | ||
PLN02188 | PLN02188 | 2.0e-67 | 99 | 486 | 393 | + polygalacturonase/glycoside hydrolase family protein | ||
pfam00295 | Glyco_hydro_28 | 3.0e-73 | 150 | 485 | 337 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 1.0e-74 | 101 | 486 | 391 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 2.0e-87 | 99 | 513 | 420 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABK95830.1 | 0 | 1 | 534 | 4 | 516 | unknown [Populus trichocarpa] |
RefSeq | NP_564758.2 | 0 | 3 | 534 | 6 | 539 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
RefSeq | XP_002266600.1 | 0 | 1 | 534 | 1 | 505 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002311773.1 | 0 | 1 | 534 | 4 | 517 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002525361.1 | 0 | 1 | 534 | 1 | 519 | polygalacturonase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 1e-22 | 195 | 436 | 96 | 317 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 3jur_D | 1e-20 | 101 | 484 | 29 | 411 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 1e-20 | 101 | 484 | 29 | 411 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 1e-20 | 101 | 484 | 29 | 411 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 1e-20 | 101 | 484 | 29 | 411 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |