| Basic Information | |
|---|---|
| Species | Manihot esculenta |
| Cazyme ID | cassava4.1_023138m |
| Family | GH28 |
| Protein Properties | Length: 368 Molecular Weight: 39896.5 Isoelectric Point: 8.8667 |
| Chromosome | Chromosome/Scaffold: 05124 Start: 3135 End: 4624 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 52 | 302 | 0 |
| KEVCSAKGSNRVVVPKGTYSIGLPDLNGQCKEAMELQVQGTLLAPINPSKYAKDSWITFAYIDQFKLSGGGTFDEQGQVAWKHNNCGRNPKCKRLPVSLR FHFITNSVVQDVTSLDSKNFHVNVLGGKNLTFDRFTITAPGDSVNTHGNHIGHSNGINIINSNIATGDDCISIGDASEQIRITNVRCGHGHGISMGSLGK SSDEFVSGIFVRNCTFYDTDNGVRIKTWPALHGGLASDMHFEDIMMKNISN | |||
| Full Sequence |
|---|
| Protein Sequence Length: 368 Download |
| MTTLKTYFSL TSLLLLFVFA DRVQSAVFDV KNYGDKADGK LDISKALLGA WKEVCSAKGS 60 NRVVVPKGTY SIGLPDLNGQ CKEAMELQVQ GTLLAPINPS KYAKDSWITF AYIDQFKLSG 120 GGTFDEQGQV AWKHNNCGRN PKCKRLPVSL RFHFITNSVV QDVTSLDSKN FHVNVLGGKN 180 LTFDRFTITA PGDSVNTHGN HIGHSNGINI INSNIATGDD CISIGDASEQ IRITNVRCGH 240 GHGISMGSLG KSSDEFVSGI FVRNCTFYDT DNGVRIKTWP ALHGGLASDM HFEDIMMKNI 300 SNVTFKNIRG SSATTVAVRL NCSSSFPCQK VELADINLTY RGKEGPVKSL CANVKPTLKG 360 KLTPTIC* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02218 | PLN02218 | 3.0e-59 | 30 | 364 | 367 | + polygalacturonase ADPG | ||
| PLN02155 | PLN02155 | 6.0e-61 | 25 | 367 | 371 | + polygalacturonase | ||
| PLN02793 | PLN02793 | 1.0e-63 | 27 | 367 | 377 | + Probable polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 2.0e-91 | 55 | 355 | 327 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02188 | PLN02188 | 3.0e-98 | 25 | 367 | 374 | + polygalacturonase/glycoside hydrolase family protein | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| DDBJ | BAA89476.1 | 0 | 20 | 367 | 23 | 393 | polygalacturonase [Salix gilgiana] |
| DDBJ | BAA89477.1 | 0 | 20 | 367 | 23 | 393 | polygalacturonase [Salix gilgiana] |
| DDBJ | BAA89478.1 | 0 | 20 | 367 | 23 | 393 | polygalacturonase [Salix gilgiana] |
| RefSeq | XP_002310765.1 | 0 | 4 | 367 | 3 | 391 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002329175.1 | 0 | 12 | 367 | 14 | 393 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2iq7_G | 0.0000000000005 | 42 | 301 | 7 | 256 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_F | 0.0000000000005 | 42 | 301 | 7 | 256 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_E | 0.0000000000005 | 42 | 301 | 7 | 256 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_D | 0.0000000000005 | 42 | 301 | 7 | 256 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_C | 0.0000000000005 | 42 | 301 | 7 | 256 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
