| Basic Information | |
|---|---|
| Species | Manihot esculenta |
| Cazyme ID | cassava4.1_023158m |
| Family | PL1 |
| Protein Properties | Length: 287 Molecular Weight: 31995 Isoelectric Point: 10.2125 |
| Chromosome | Chromosome/Scaffold: 02895 Start: 519434 End: 521306 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| PL1 | 99 | 224 | 1.6e-28 |
| VWITFQKNMNIQLVKPLLISSFTTLDGRGVDIHITGNACLLVYKATDVIIHGLRIHHCKAVGPSSVRGPNGEMVPLGQMDGDAIRLVTASKVWIDHNTLY SCQDGLLDVTRGSTDVTWRNGINENS | |||
| Full Sequence |
|---|
| Protein Sequence Length: 287 Download |
| MAVQRNFLLA LSLVIFFFMT PSFCVVQMMN PIDSCWRQNP NWRRSRQQLA TCSVGFSGKM 60 TNNIGKDTIR YKVSDPRDDP LNPKKGTLRY GATMITGKVW ITFQKNMNIQ LVKPLLISSF 120 TTLDGRGVDI HITGNACLLV YKATDVIIHG LRIHHCKAVG PSSVRGPNGE MVPLGQMDGD 180 AIRLVTASKV WIDHNTLYSC QDGLLDVTRG STDVTWRNGI NENSKPWKFY SVGDVFENGA 240 SFIQTGLRGA KPNYNDQQRF KVADAKFVRS ITKSSGALKC FRTIMC* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
 | ||||||||
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3866 | PelB | 0.0003 | 117 | 215 | 108 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 2.0e-17 | 104 | 218 | 123 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 9.0e-25 | 106 | 215 | 121 | + Amb_all domain. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | XP_002299118.1 | 0 | 29 | 218 | 1 | 190 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002299118.1 | 2e-21 | 210 | 286 | 276 | 354 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002304865.1 | 0 | 29 | 218 | 1 | 190 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002304865.1 | 3e-26 | 208 | 286 | 273 | 352 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002527354.1 | 0 | 7 | 218 | 6 | 218 | Major pollen allergen Jun v 1 precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 0 | 30 | 218 | 2 | 189 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0 | 30 | 218 | 2 | 189 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 2pec_A | 0.007 | 133 | 206 | 100 | 160 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
