| Basic Information | |
|---|---|
| Species | Manihot esculenta |
| Cazyme ID | cassava4.1_023296m |
| Family | GH28 |
| Protein Properties | Length: 427 Molecular Weight: 46230.5 Isoelectric Point: 5.4559 |
| Chromosome | Chromosome/Scaffold: 00341 Start: 455047 End: 456662 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 72 | 421 | 0 |
| YASNGGAQLVVPPGKWLTGSFNLISHFTLFLHKDAVLLASEDEAEWPILPPLPSYGRGRDAPGGRFSSLIFGTNLTDVVITGNNGTIDGQGATWWDKFKK NLLKETRPYLIEFLYSNNIQISNLTLINSPSWNVHPTYSSDVLIQGLTIVAPIDSPNTDGINPDSCSNVKIQDCYVVSGDDCVAVKSGWDEYGIKVGIPT KQLVIRRLTCISPDSATIALGSEMSGGIEDVRAEDITAINTQSGVRIKTAAGRGAYVKDIFVRRLNLNTMKYVFWMTGNYGSHPHEGYDPNALPNITQIN YKDVVAENVTYSARLEGIEKDPFTGICISNVSITLTEKPKKLQWNCTDIS | |||
| Full Sequence |
|---|
| Protein Sequence Length: 427 Download |
| IFEVLSIIFI LGSIVSRLGE CREVIAASEG VSYPAINCRR NSAVLTDFGG VGDGKTSNTI 60 AFKSAIANLS NYASNGGAQL VVPPGKWLTG SFNLISHFTL FLHKDAVLLA SEDEAEWPIL 120 PPLPSYGRGR DAPGGRFSSL IFGTNLTDVV ITGNNGTIDG QGATWWDKFK KNLLKETRPY 180 LIEFLYSNNI QISNLTLINS PSWNVHPTYS SDVLIQGLTI VAPIDSPNTD GINPDSCSNV 240 KIQDCYVVSG DDCVAVKSGW DEYGIKVGIP TKQLVIRRLT CISPDSATIA LGSEMSGGIE 300 DVRAEDITAI NTQSGVRIKT AAGRGAYVKD IFVRRLNLNT MKYVFWMTGN YGSHPHEGYD 360 PNALPNITQI NYKDVVAENV TYSARLEGIE KDPFTGICIS NVSITLTEKP KKLQWNCTDI 420 SGISSM* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02188 | PLN02188 | 7.0e-21 | 4 | 322 | 325 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN02218 | PLN02218 | 3.0e-24 | 45 | 404 | 375 | + polygalacturonase ADPG | ||
| PLN03003 | PLN03003 | 7.0e-29 | 41 | 426 | 400 | + Probable polygalacturonase At3g15720 | ||
| pfam00295 | Glyco_hydro_28 | 7.0e-33 | 141 | 425 | 297 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| COG5434 | PGU1 | 1.0e-55 | 29 | 384 | 384 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAP33475.1 | 0 | 7 | 425 | 5 | 430 | polygalacturonase-like protein [Fragaria x ananassa] |
| GenBank | ACU17976.1 | 0 | 4 | 425 | 15 | 433 | unknown [Glycine max] |
| RefSeq | XP_002327490.1 | 0 | 4 | 425 | 1 | 414 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002509850.1 | 0 | 33 | 425 | 43 | 435 | polygalacturonase, putative [Ricinus communis] |
| RefSeq | XP_002513653.1 | 0 | 1 | 425 | 12 | 435 | polygalacturonase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 0 | 45 | 404 | 30 | 410 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 0 | 45 | 404 | 30 | 410 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 0 | 45 | 404 | 30 | 410 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 0 | 45 | 404 | 30 | 410 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 1bhe_A | 7e-16 | 87 | 378 | 52 | 336 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
