| Basic Information | |
|---|---|
| Species | Manihot esculenta |
| Cazyme ID | cassava4.1_023546m |
| Family | PL1 |
| Protein Properties | Length: 438 Molecular Weight: 49104 Isoelectric Point: 9.5052 |
| Chromosome | Chromosome/Scaffold: 01497 Start: 138433 End: 139986 |
| Description | Pectate lyase family protein |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| PL1 | 151 | 356 | 0 |
| QKVPLWITFSRNMNIRLNQELIMTGDKTIDARGAQVHITGGAGLTLQFIKNVIIHGLYFHDIVVGSGGMIRDSVDHYGLRTQSDGDGISIFGSTNVWIDH VSMSKCQDGLIDAIMGSTAVTVSNCHFTDHNEVMLFGASDGYTGDTLMQITVAFNHFGKGLVQRMPRCRYGFVHVVNNDYTHWRMYAIGGSRNPTIISQG NRFIAP | |||
| Full Sequence |
|---|
| Protein Sequence Length: 438 Download |
| METLKFLLIF LAAFVVIVHA DLPHFDEYWN VRAVEAKQNT IEAYHPDPFN VTNKFNYLVN 60 QATIDLNGTR RSLFRKNRKK GGPCVATNPI DQCWRCNPRW AENRKRLAEC ALGFGYKTTG 120 GKNGKFYVVT DPSDNDMVNP KPGTLRYAVI QKVPLWITFS RNMNIRLNQE LIMTGDKTID 180 ARGAQVHITG GAGLTLQFIK NVIIHGLYFH DIVVGSGGMI RDSVDHYGLR TQSDGDGISI 240 FGSTNVWIDH VSMSKCQDGL IDAIMGSTAV TVSNCHFTDH NEVMLFGASD GYTGDTLMQI 300 TVAFNHFGKG LVQRMPRCRY GFVHVVNNDY THWRMYAIGG SRNPTIISQG NRFIAPNDLN 360 CKQVTKREYA MESEWKNWNW RSQDDLLMNG AYFVQSGNSK INRKFTTQQI IKSKPGSFVS 420 KLTRSSGPLG CAVGRAC* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam04431 | Pec_lyase_N | 4.0e-16 | 25 | 73 | 50 | + Pectate lyase, N terminus. This region is found N terminal to the pectate lyase domain (pfam00544) in some plant pectate lyase enzymes. | ||
| COG3866 | PelB | 7.0e-28 | 118 | 353 | 248 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 8.0e-68 | 169 | 353 | 207 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 1.0e-77 | 162 | 357 | 207 | + Amb_all domain. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0030570 | pectate lyase activity |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAN79927.1 | 0 | 18 | 437 | 24 | 439 | hypothetical protein [Vitis vinifera] |
| EMBL | CBI22159.1 | 0 | 18 | 437 | 53 | 468 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002311599.1 | 0 | 7 | 437 | 1 | 429 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002330086.1 | 0 | 6 | 437 | 7 | 435 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002520133.1 | 0 | 1 | 437 | 4 | 440 | Pectate lyase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 0 | 88 | 427 | 2 | 343 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0 | 88 | 427 | 2 | 343 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 3zsc_A | 5e-16 | 169 | 355 | 62 | 248 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1vbl_A | 0.0000000000001 | 154 | 366 | 110 | 343 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| PDB | 1pcl_A | 0.0000000000005 | 166 | 357 | 71 | 280 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |
