| Basic Information | |
|---|---|
| Species | Manihot esculenta |
| Cazyme ID | cassava4.1_024092m |
| Family | AA3 |
| Protein Properties | Length: 329 Molecular Weight: 36329.9 Isoelectric Point: 7.8129 |
| Chromosome | Chromosome/Scaffold: 11560 Start: 23174 End: 24253 |
| Description | Glucose-methanol-choline (GMC) oxidoreductase family protein |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| AA3 | 23 | 316 | 1.10002e-42 |
| AGNPENITILLAATVRSIIFHSNGKNETKACGIRFIKIEGSSDQTYEAYLNQPESLNSWGDVILSAGALGCPQILMLSGIGPEKHLKNFNLSLVLDLKGV GQEMKDCPAIALLADTKAEYQVTGIAKDFKFIVQGGILPISFNATRMPIAIKLAFPESEGKLKLSSTDPRQNPSVQFNYLSKEEDMDECIEMSQLLERVT RSKSVTLFLKTVPQNNLMSTPDELRNFCKNNVRTYYHYHGGCTVGSVDKDYKVYGIKGLRVIEGSTFLESLGTNPMATLLMLGRYQGIKILRER | |||
| Full Sequence |
|---|
| Protein Sequence Length: 329 Download |
| TKIGGTIFDE FGIRLTLADL LRAGNPENIT ILLAATVRSI IFHSNGKNET KACGIRFIKI 60 EGSSDQTYEA YLNQPESLNS WGDVILSAGA LGCPQILMLS GIGPEKHLKN FNLSLVLDLK 120 GVGQEMKDCP AIALLADTKA EYQVTGIAKD FKFIVQGGIL PISFNATRMP IAIKLAFPES 180 EGKLKLSSTD PRQNPSVQFN YLSKEEDMDE CIEMSQLLER VTRSKSVTLF LKTVPQNNLM 240 STPDELRNFC KNNVRTYYHY HGGCTVGSVD KDYKVYGIKG LRVIEGSTFL ESLGTNPMAT 300 LLMLGRYQGI KILREREIAS LFPNQQHP* 360 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| TIGR03970 | Rv0697 | 4.0e-20 | 75 | 305 | 252 | + dehydrogenase, Rv0697 family. This model describes a set of dehydrogenases belonging to the glucose-methanol-choline oxidoreductase (GMC oxidoreductase) family. Members of the present family are restricted to Actinobacterial genome contexts containing also members of families TIGR03962 and TIGR03969 (the mycofactocin system), and are proposed to be uniform in function. | ||
| COG2303 | BetA | 1.0e-26 | 84 | 320 | 285 | + Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism] | ||
| pfam05199 | GMC_oxred_C | 4.0e-29 | 178 | 305 | 136 | + GMC oxidoreductase. This domain found associated with pfam00732. | ||
| TIGR01810 | betA | 2.0e-30 | 28 | 305 | 329 | + choline dehydrogenase. Choline dehydrogenase catalyzes the conversion of exogenously supplied choline into the intermediate glycine betaine aldehyde, as part of a two-step oxidative reaction leading to the formation of osmoprotectant betaine. This enzymatic system can be found in both gram-positive and gram-negative bacteria. As in Escherichia coli , Staphylococcus xylosus , and Sinorhizobium meliloti, this enzyme is found associated in a transciptionally co-induced gene cluster with betaine aldehyde dehydrogenase, the second catalytic enzyme in this reaction. Other gram-positive organisms have been shown to employ a different enzymatic system, utlizing a soluable choline oxidase or type III alcohol dehydrogenase instead of choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified [Cellular processes, Adaptations to atypical conditions]. | ||
| PLN02785 | PLN02785 | 2.0e-82 | 1 | 316 | 382 | + Protein HOTHEAD | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0016614 | oxidoreductase activity, acting on CH-OH group of donors |
| GO:0055114 | oxidation-reduction process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | NP_172871.1 | 0 | 1 | 317 | 168 | 484 | glucose-methanol-choline (GMC) oxidoreductase family protein [Arabidopsis thaliana] |
| RefSeq | XP_002312249.1 | 0 | 1 | 328 | 165 | 492 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002315047.1 | 0 | 1 | 315 | 171 | 489 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002315048.1 | 0 | 1 | 328 | 202 | 538 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002522448.1 | 0 | 1 | 328 | 202 | 537 | glucose-methanol-choline (gmc) oxidoreductase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1ju2_B | 0 | 1 | 321 | 181 | 522 | A Chain A, Crystal Structure Of The Hydroxynitrile Lyase From Almond |
| PDB | 1ju2_A | 0 | 1 | 321 | 181 | 522 | A Chain A, Crystal Structure Of The Hydroxynitrile Lyase From Almond |
| PDB | 3gdp_B | 0 | 1 | 319 | 181 | 520 | A Chain A, Crystal Structure Of The Hydroxynitrile Lyase From Almond |
| PDB | 3gdp_A | 0 | 1 | 319 | 181 | 520 | A Chain A, Crystal Structure Of The Hydroxynitrile Lyase From Almond |
| PDB | 3gdn_B | 0 | 1 | 319 | 181 | 520 | A Chain A, Almond Hydroxynitrile Lyase In Complex With Benzaldehyde |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| cutin biosynthesis | RXN-2121 | EC-1.1.1 | 18-hydroxyoleate dehydrogenase |
| cutin biosynthesis | RXN-9802 | EC-1.1.1 | 16-hydroxypalmitate dehydrogenase |
| suberin biosynthesis | RXN-2121 | EC-1.1.1 | 18-hydroxyoleate dehydrogenase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| FF535424 | 211 | 65 | 269 | 0 |
| HO808060 | 252 | 79 | 322 | 0 |
| EX098969 | 275 | 1 | 269 | 0 |
| DT487776 | 176 | 143 | 317 | 0 |
| CT981001 | 212 | 112 | 316 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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