| Basic Information | |
|---|---|
| Species | Manihot esculenta |
| Cazyme ID | cassava4.1_024146m |
| Family | GH28 |
| Protein Properties | Length: 425 Molecular Weight: 47517.2 Isoelectric Point: 7.48 |
| Chromosome | Chromosome/Scaffold: 04526 Start: 11444 End: 18550 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 63 | 332 | 0 |
| DACPTTSCRVSFPPGTYLTATIHLKSNVILDIQEGATLLGGTKIRDYPKEFDRWYVVLAENATDVGITGGGVVDGQGLKFVQRFNEVKNVMVSWNQTGAC LGDECRPRLVGFIGCRNVRVWNIRLRDPAYWCLHIVRCHNTSIFDVSIFGDFNTPNNDGMDIEDSNNTVITRCHIDTGDDAICPKTYNTPLHNLTATNCW IRTKSSAIKFGSASSFDFKNLVFDNITIVDSHRGLALQIRDGATSENGVFLSGSKGGLLSNLRFINMNLT | |||
| Full Sequence |
|---|
| Protein Sequence Length: 425 Download |
| MTARLFQLVI LLILLPLLQS RPHASQSTNI YLPLQITTLS VADFGATGDG LHYDTRAIQS 60 TIDACPTTSC RVSFPPGTYL TATIHLKSNV ILDIQEGATL LGGTKIRDYP KEFDRWYVVL 120 AENATDVGIT GGGVVDGQGL KFVQRFNEVK NVMVSWNQTG ACLGDECRPR LVGFIGCRNV 180 RVWNIRLRDP AYWCLHIVRC HNTSIFDVSI FGDFNTPNND GMDIEDSNNT VITRCHIDTG 240 DDAICPKTYN TPLHNLTATN CWIRTKSSAI KFGSASSFDF KNLVFDNITI VDSHRGLALQ 300 IRDGATSENG VFLSGSKGGL LSNLRFINMN LTYRRWTKYT GGLVDYRPGC QGLVNHSAAG 360 IIMEHLEGLE VENVSMRWSD NKKEQWDNPL DFRPSTIRQT SSHVLRCELP FHLVLQKFLI 420 DMYSK 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02188 | PLN02188 | 7.0e-8 | 169 | 244 | 76 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN03003 | PLN03003 | 2.0e-8 | 156 | 261 | 106 | + Probable polygalacturonase At3g15720 | ||
| pfam12708 | Pectate_lyase_3 | 3.0e-9 | 40 | 287 | 253 | + Pectate lyase superfamily protein. This family of proteins possesses a beta helical structure like Pectate lyase. This family is most closely related to glycosyl hydrolase family 28. | ||
| PLN02218 | PLN02218 | 2.0e-12 | 37 | 244 | 230 | + polygalacturonase ADPG | ||
| COG5434 | PGU1 | 4.0e-48 | 29 | 306 | 312 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | XP_002282920.1 | 0 | 1 | 401 | 1 | 458 | PREDICTED: hypothetical protein isoform 1 [Vitis vinifera] |
| RefSeq | XP_002282925.1 | 0 | 1 | 401 | 1 | 453 | PREDICTED: hypothetical protein isoform 2 [Vitis vinifera] |
| RefSeq | XP_002322693.1 | 0 | 28 | 417 | 1 | 443 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002526753.1 | 0 | 2 | 421 | 3 | 428 | pentatricopeptide repeat-containing protein, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 3e-21 | 39 | 363 | 28 | 405 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 3e-21 | 39 | 363 | 28 | 405 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 3e-21 | 39 | 363 | 28 | 405 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 3e-21 | 39 | 363 | 28 | 405 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 2uvf_B | 6e-20 | 39 | 244 | 157 | 405 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
