| Basic Information | |
|---|---|
| Species | Manihot esculenta |
| Cazyme ID | cassava4.1_024289m |
| Family | PL1 |
| Protein Properties | Length: 368 Molecular Weight: 41123 Isoelectric Point: 9.6757 |
| Chromosome | Chromosome/Scaffold: 08994 Start: 170415 End: 172290 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| PL1 | 88 | 287 | 0 |
| WITFQKNMNIELVKPLLISSFTTLDGRGVDVHITGNACLLVYKATDVIIHGLRIHHCMAVGPSSVRGPNGEMVALGKMDGDAIRLVTASKVWIDHNTLYA CQDGLLDVTRGSTHITISNNWFKDQDKVMLLGHDDGYLRDKDMKVTVVFNHFGPNCNQRMPRVRHGYAHVANNLYQGWEQYAIGGSMNPSIKSESNYFIA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 368 Download |
| MAFFFFFAPD FCLAQKMNPI DSCWRQNPNW RRNRQQLATC SVGFAGKMTN NIGKDVIRYK 60 VTDPRDDPLN PKPGSLRYGA TMITGKVWIT FQKNMNIELV KPLLISSFTT LDGRGVDVHI 120 TGNACLLVYK ATDVIIHGLR IHHCMAVGPS SVRGPNGEMV ALGKMDGDAI RLVTASKVWI 180 DHNTLYACQD GLLDVTRGST HITISNNWFK DQDKVMLLGH DDGYLRDKDM KVTVVFNHFG 240 PNCNQRMPRV RHGYAHVANN LYQGWEQYAI GGSMNPSIKS ESNYFIAPKS GNKEVTWRQG 300 VNVKSRPWNF YSVRDVFENG ASFTQSGVGG AKPNYNNQER FEVADAKSVK SITSSSGALK 360 CFRTIMC* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3866 | PelB | 3.0e-26 | 105 | 285 | 198 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 8.0e-58 | 92 | 285 | 202 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 1.0e-69 | 94 | 289 | 207 | + Amb_all domain. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CBI26401.1 | 0 | 48 | 367 | 1 | 320 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002267384.1 | 0 | 2 | 367 | 4 | 369 | PREDICTED: similar to putative Cup s 1 pollen allergen [Vitis vinifera] |
| RefSeq | XP_002299118.1 | 0 | 17 | 367 | 1 | 354 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002304865.1 | 0 | 17 | 367 | 1 | 352 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002527354.1 | 0 | 3 | 295 | 15 | 307 | Major pollen allergen Jun v 1 precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 0 | 18 | 359 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0 | 18 | 359 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1vbl_A | 6e-17 | 103 | 285 | 128 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| PDB | 1jta_A | 1e-16 | 105 | 293 | 85 | 296 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| PDB | 1jrg_B | 1e-16 | 105 | 293 | 85 | 296 | A Chain A, Crystal Structure Of The R3 Form Of Pectate Lyase A, Erwinia Chrysanthemi |
