| Basic Information | |
|---|---|
| Species | Manihot esculenta |
| Cazyme ID | cassava4.1_024357m |
| Family | GH28 |
| Protein Properties | Length: 268 Molecular Weight: 29859.2 Isoelectric Point: 8.6548 |
| Chromosome | Chromosome/Scaffold: 03325 Start: 4675 End: 5820 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 17 | 256 | 0 |
| WHQYPSEHAKDKWITFAYIDQFTLSSGGTFDGQGQVAWKQNNYGRNPKYKRLLVVSLIECVVKDVTSLDSKNFYVNVLGGKNLTFDRFTIIAPGHNFNTD GIHIGHSNGINIINSNIATGDDCISIDGKTTDEFISGIFVRNCTIYDTDNGVRIKTWPALHGGMAFDIHFEDIMMKNLSSKVKIANVTFKNIRGSSVIGL VVRLNCSSSIPCEKVELADINLTYRGKEGPAKSLCANVKP | |||
| Full Sequence |
|---|
| Protein Sequence Length: 268 Download |
| MVHKGEPWSF KFKEPWWHQY PSEHAKDKWI TFAYIDQFTL SSGGTFDGQG QVAWKQNNYG 60 RNPKYKRLLV VSLIECVVKD VTSLDSKNFY VNVLGGKNLT FDRFTIIAPG HNFNTDGIHI 120 GHSNGINIIN SNIATGDDCI SIDGKTTDEF ISGIFVRNCT IYDTDNGVRI KTWPALHGGM 180 AFDIHFEDIM MKNLSSKVKI ANVTFKNIRG SSVIGLVVRL NCSSSIPCEK VELADINLTY 240 RGKEGPAKSL CANVKPTLKE KLTPTMC* 300 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02218 | PLN02218 | 3.0e-21 | 26 | 255 | 282 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 2.0e-25 | 28 | 267 | 291 | + Probable polygalacturonase | ||
| PLN02155 | PLN02155 | 8.0e-29 | 29 | 267 | 286 | + polygalacturonase | ||
| PLN02188 | PLN02188 | 3.0e-44 | 29 | 255 | 277 | + polygalacturonase/glycoside hydrolase family protein | ||
| pfam00295 | Glyco_hydro_28 | 4.0e-50 | 26 | 255 | 277 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| DDBJ | BAA89476.1 | 0 | 21 | 267 | 98 | 393 | polygalacturonase [Salix gilgiana] |
| DDBJ | BAA89477.1 | 0 | 21 | 267 | 98 | 393 | polygalacturonase [Salix gilgiana] |
| DDBJ | BAA89478.1 | 0 | 21 | 267 | 98 | 393 | polygalacturonase [Salix gilgiana] |
| RefSeq | XP_002310765.1 | 0 | 29 | 267 | 104 | 391 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002329175.1 | 0 | 21 | 267 | 98 | 393 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 0.00000007 | 27 | 239 | 100 | 362 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1ib4_B | 0.00001 | 1 | 254 | 49 | 333 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1ib4_A | 0.00001 | 1 | 254 | 49 | 333 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1ia5_A | 0.00001 | 1 | 254 | 49 | 333 | A Chain A, Polygalacturonase From Aspergillus Aculeatus |
| PDB | 2iq7_G | 0.00007 | 41 | 195 | 75 | 256 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
| Hydropathy |
|---|
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| GR462194 | 278 | 24 | 251 | 0 |
| EL587166 | 274 | 35 | 258 | 0 |
| EH772281 | 288 | 27 | 261 | 0 |
| GR463354 | 272 | 46 | 267 | 1.4013e-45 |
| EE257565 | 226 | 78 | 258 | 5.60519e-45 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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