| Basic Information | |
|---|---|
| Species | Manihot esculenta |
| Cazyme ID | cassava4.1_025157m |
| Family | GH28 |
| Protein Properties | Length: 393 Molecular Weight: 42910.3 Isoelectric Point: 9.9677 |
| Chromosome | Chromosome/Scaffold: 08017 Start: 552 End: 2706 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 44 | 382 | 0 |
| KGACGAAGSGKVVIPKGKYSLGVVDLVGPCKGAMHLQVEGTLVAPAKASQHHKNSWVTLRYLDRLTVFGGGAFDGQGEIAWQRKYYGDRCKTTLPVVRKS KHCFTHQRPFIGPFMAVMLTTFSNLRFDFVTNSIVEDVTSIDSKQFHINLLGSKNLTFQRFSVKAPGHSPNTDGIHIGRSEHINIINSNIITGDDCISFG RGSKQVRITNVRCGHGHGISIGSLRKYEKEEPVSGIYVKNCTIYDTDNGDIVMQNVSNPFIIDQMYCPHKLCNRKKPSKVKISDVSFKNIRGSSRTPTTV QLTCSSSVPCKNIEHSNVNLQYTGYKGPAKSICTNVKPK | |||
| Full Sequence |
|---|
| Protein Sequence Length: 393 Download |
| YSFSVRSTGL DKEGCGAQPN TFDVTKYGAK EGSDIPKALL SAWKGACGAA GSGKVVIPKG 60 KYSLGVVDLV GPCKGAMHLQ VEGTLVAPAK ASQHHKNSWV TLRYLDRLTV FGGGAFDGQG 120 EIAWQRKYYG DRCKTTLPVV RKSKHCFTHQ RPFIGPFMAV MLTTFSNLRF DFVTNSIVED 180 VTSIDSKQFH INLLGSKNLT FQRFSVKAPG HSPNTDGIHI GRSEHINIIN SNIITGDDCI 240 SFGRGSKQVR ITNVRCGHGH GISIGSLRKY EKEEPVSGIY VKNCTIYDTD NGDIVMQNVS 300 NPFIIDQMYC PHKLCNRKKP SKVKISDVSF KNIRGSSRTP TTVQLTCSSS VPCKNIEHSN 360 VNLQYTGYKG PAKSICTNVK PKIIGKLILR GC* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02218 | PLN02218 | 1.0e-59 | 19 | 378 | 385 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 5.0e-64 | 22 | 376 | 383 | + Probable polygalacturonase | ||
| PLN02155 | PLN02155 | 1.0e-64 | 20 | 392 | 397 | + polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 2.0e-87 | 47 | 380 | 353 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02188 | PLN02188 | 4.0e-102 | 16 | 392 | 401 | + polygalacturonase/glycoside hydrolase family protein | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| DDBJ | BAA89476.1 | 0 | 17 | 392 | 25 | 393 | polygalacturonase [Salix gilgiana] |
| DDBJ | BAA89477.1 | 0 | 17 | 392 | 25 | 393 | polygalacturonase [Salix gilgiana] |
| DDBJ | BAA89478.1 | 0 | 17 | 392 | 25 | 393 | polygalacturonase [Salix gilgiana] |
| RefSeq | XP_002329175.1 | 0 | 17 | 392 | 25 | 393 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002526193.1 | 0 | 22 | 392 | 26 | 392 | hypothetical protein RCOM_0764760 [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 0.000000000003 | 110 | 356 | 113 | 372 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1ib4_B | 0.00000007 | 173 | 379 | 112 | 333 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1ib4_A | 0.00000007 | 173 | 379 | 112 | 333 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1ia5_A | 0.00000007 | 173 | 379 | 112 | 333 | A Chain A, Polygalacturonase From Aspergillus Aculeatus |
| PDB | 2iq7_G | 0.000002 | 208 | 379 | 149 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
| Hydropathy |
|---|
 |
| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| EE255351 | 312 | 22 | 311 | 0 |
| EE255197 | 310 | 22 | 309 | 0 |
| EC987202 | 304 | 22 | 302 | 0 |
| FC885548 | 311 | 22 | 311 | 0 |
| DY292761 | 324 | 22 | 323 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
|---|
 |
