| Basic Information | |
|---|---|
| Species | Manihot esculenta |
| Cazyme ID | cassava4.1_025673m |
| Family | GH28 |
| Protein Properties | Length: 285 Molecular Weight: 29862.5 Isoelectric Point: 8.5605 |
| Chromosome | Chromosome/Scaffold: 11456 Start: 140805 End: 142431 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 26 | 273 | 0 |
| SAWKQACASTRPATITIPAGRNIAITGLTSLNSQMFNIDINGCHNAKLQGITVSSPGNSPNTDGIHVQMSSDVTILNSKVGTGDDCISIGPGTTNLWVEN FICGPGHGISIGSLGKDLREAGVQNVTVKSARIAGTQNGLRIKSWGRPSSGFARNIIFQHVAMNNVNNPIIIDQNYCPHNKNCPGQASGVKINDVTYQDI HGTSATEVAVKFDCSKRNPCTGIRMEDVKITYNNRPADASCNNADGKA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 285 Download |
| TGAQYNVLSY GAKPDGKTDS TKALVSAWKQ ACASTRPATI TIPAGRNIAI TGLTSLNSQM 60 FNIDINGCHN AKLQGITVSS PGNSPNTDGI HVQMSSDVTI LNSKVGTGDD CISIGPGTTN 120 LWVENFICGP GHGISIGSLG KDLREAGVQN VTVKSARIAG TQNGLRIKSW GRPSSGFARN 180 IIFQHVAMNN VNNPIIIDQN YCPHNKNCPG QASGVKINDV TYQDIHGTSA TEVAVKFDCS 240 KRNPCTGIRM EDVKITYNNR PADASCNNAD GKASGVVQPS SCLS* 300 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02188 | PLN02188 | 7.0e-8 | 5 | 45 | 41 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN02155 | PLN02155 | 6.0e-8 | 5 | 45 | 41 | + polygalacturonase | ||
| PLN02188 | PLN02188 | 9.0e-73 | 37 | 282 | 249 | + polygalacturonase/glycoside hydrolase family protein | ||
| pfam00295 | Glyco_hydro_28 | 5.0e-77 | 35 | 274 | 240 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02155 | PLN02155 | 8.0e-95 | 39 | 284 | 247 | + polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | XP_002309718.1 | 0.00000000003 | 3 | 64 | 26 | 91 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002309718.1 | 0 | 39 | 283 | 148 | 392 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002331621.1 | 0 | 47 | 283 | 160 | 396 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002529090.1 | 0.00000000000001 | 1 | 64 | 25 | 92 | Polygalacturonase precursor, putative [Ricinus communis] |
| RefSeq | XP_002529090.1 | 0 | 46 | 283 | 156 | 393 | Polygalacturonase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 3e-21 | 37 | 256 | 151 | 362 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1hg8_A | 5e-16 | 47 | 267 | 114 | 341 | A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme |
| PDB | 1ib4_B | 0.0000000000002 | 35 | 266 | 102 | 339 | A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme |
| PDB | 1ib4_A | 0.0000000000002 | 35 | 266 | 102 | 339 | A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme |
| PDB | 1ia5_A | 0.0000000000002 | 35 | 266 | 102 | 339 | A Chain A, Polygalacturonase From Aspergillus Aculeatus |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
| Hydropathy |
|---|
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| EE255801 | 235 | 49 | 283 | 0 |
| EC946744 | 245 | 39 | 283 | 0 |
| JG078849 | 238 | 46 | 283 | 0 |
| JG072147 | 238 | 46 | 283 | 0 |
| DT512918 | 237 | 47 | 283 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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