y
Basic Information | |
---|---|
Species | Manihot esculenta |
Cazyme ID | cassava4.1_025978m |
Family | GH28 |
Protein Properties | Length: 391 Molecular Weight: 42370.7 Isoelectric Point: 9.5792 |
Chromosome | Chromosome/Scaffold: 11341 Start: 476948 End: 478415 |
Description | Pectin lyase-like superfamily protein |
View CDS |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
GH28 | 51 | 376 | 0 |
AACGSKGSSMIYVPKGRYLVGSLLFKGPCKSPDITIQIDGTLVAPTGYQHLGQAGNWLSFYGVAGVSIVGGALDAKGRHLWDCKAAGSNCPTGASTLSFT NAKNIKIKRLFSLNSQMFHIVLNGCHNVKIEGVKVKAPGNSPNTDGIHVQFATDVVILNSSIKTGDDCISIGPGTKNLWIEGIQCGPGHGISIGSLANEM DEEGVQNVTIKRTIFRNASNGFRIKSWARPSNGFVERIRFKRAIMYNVQNPIIIDQNYCPHNLNCPNQVSGIKINDVIYRGIRGISATPVAIKFDCSSKF PCSKIRLYNVNLTYPNQTAHSSCVNV |
Full Sequence |
---|
Protein Sequence Length: 391 Download |
MARLIFFFFI FLAWHFNSSF AQTNYYNVLR YGAKPNGVTD STNALFDAWL AACGSKGSSM 60 IYVPKGRYLV GSLLFKGPCK SPDITIQIDG TLVAPTGYQH LGQAGNWLSF YGVAGVSIVG 120 GALDAKGRHL WDCKAAGSNC PTGASTLSFT NAKNIKIKRL FSLNSQMFHI VLNGCHNVKI 180 EGVKVKAPGN SPNTDGIHVQ FATDVVILNS SIKTGDDCIS IGPGTKNLWI EGIQCGPGHG 240 ISIGSLANEM DEEGVQNVTI KRTIFRNASN GFRIKSWARP SNGFVERIRF KRAIMYNVQN 300 PIIIDQNYCP HNLNCPNQVS GIKINDVIYR GIRGISATPV AIKFDCSSKF PCSKIRLYNV 360 NLTYPNQTAH SSCVNVLGDT IGIVKPSGCL * 420 |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 8.0e-82 | 27 | 386 | 367 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 2.0e-83 | 53 | 376 | 326 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 2.0e-90 | 28 | 390 | 371 | + Probable polygalacturonase | ||
PLN02188 | PLN02188 | 8.0e-97 | 21 | 389 | 376 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02155 | PLN02155 | 2.0e-139 | 19 | 390 | 373 | + polygalacturonase |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_002262690.1 | 0 | 17 | 390 | 23 | 400 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002315106.1 | 0 | 1 | 390 | 8 | 397 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002524365.1 | 0 | 1 | 390 | 1 | 387 | Polygalacturonase precursor, putative [Ricinus communis] |
RefSeq | XP_002529089.1 | 0 | 4 | 390 | 10 | 393 | Polygalacturonase precursor, putative [Ricinus communis] |
RefSeq | XP_002529090.1 | 0 | 6 | 390 | 9 | 393 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 2e-16 | 147 | 308 | 154 | 314 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1rmg_A | 0.000000000000003 | 18 | 362 | 13 | 338 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
PDB | 1nhc_F | 0.00000000000001 | 59 | 334 | 24 | 290 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 0.00000000000001 | 59 | 334 | 24 | 290 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 0.00000000000001 | 59 | 334 | 24 | 290 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
Metabolic Pathways | |||
---|---|---|---|
Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |