| Basic Information | |
|---|---|
| Species | Manihot esculenta |
| Cazyme ID | cassava4.1_026008m |
| Family | PL1 |
| Protein Properties | Length: 240 Molecular Weight: 26876.8 Isoelectric Point: 8.9674 |
| Chromosome | Chromosome/Scaffold: 04287 Start: 30917 End: 32451 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| PL1 | 11 | 159 | 0 |
| LRIHHCKVVGPSSVRGPNGEMVPLGQMDGDAIRLVTASKVWIDHNTLYSCQDGLLDVTHGFIDITISNNLFKDQDKVMLLGHDDGYLRDKNMRVIVVFNH FGPNCNQRMPKVRHGYAHVGNNLYQGWEQYAIGGSMNPSIKSEANYFIA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 240 Download |
| KCMIMYGILQ LRIHHCKVVG PSSVRGPNGE MVPLGQMDGD AIRLVTASKV WIDHNTLYSC 60 QDGLLDVTHG FIDITISNNL FKDQDKVMLL GHDDGYLRDK NMRVIVVFNH FGPNCNQRMP 120 KVRHGYAHVG NNLYQGWEQY AIGGSMNPSI KSEANYFIAP KSGNKEVTWR NGINENSKPL 180 MFYFVGDVFE NGASFIQTDL GGAKPNYNDQ QRFKVADAKF VRSITKSSGT LKCFRTIMC* 240 300 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3866 | PelB | 8.0e-22 | 30 | 157 | 139 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 4.0e-45 | 8 | 157 | 159 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 1.0e-50 | 8 | 161 | 163 | + Amb_all domain. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CBI26401.1 | 0 | 3 | 239 | 87 | 320 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002267384.1 | 0 | 3 | 239 | 136 | 369 | PREDICTED: similar to putative Cup s 1 pollen allergen [Vitis vinifera] |
| RefSeq | XP_002299118.1 | 0 | 2 | 239 | 109 | 354 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002304865.1 | 0 | 2 | 239 | 109 | 352 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002527354.1 | 0 | 2 | 167 | 137 | 307 | Major pollen allergen Jun v 1 precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 0 | 10 | 231 | 120 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0 | 10 | 231 | 120 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1vbl_A | 0.00000000000006 | 40 | 157 | 190 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| PDB | 1jta_A | 0.0000000000003 | 40 | 165 | 144 | 296 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| PDB | 1jrg_B | 0.0000000000003 | 40 | 165 | 144 | 296 | A Chain A, Crystal Structure Of The R3 Form Of Pectate Lyase A, Erwinia Chrysanthemi |
| Hydropathy |
|---|
 |
| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| DT575750 | 225 | 10 | 233 | 0 |
| FG474249 | 192 | 44 | 235 | 0 |
| FG478648 | 192 | 44 | 235 | 0 |
| FG468635 | 191 | 24 | 211 | 0 |
| FG468822 | 188 | 24 | 208 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
|---|
 |
| Phylogeny |
|---|
 |