| Basic Information | |
|---|---|
| Species | Manihot esculenta |
| Cazyme ID | cassava4.1_026082m |
| Family | GH28 |
| Protein Properties | Length: 467 Molecular Weight: 51045.8 Isoelectric Point: 8.192 |
| Chromosome | Chromosome/Scaffold: 00341 Start: 451778 End: 453323 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 74 | 424 | 0 |
| YASDGGAQLIVPPGKWLTGSFNLTSHFTLFLHKGAVLLASQNEEDFPLIDILPSYGREQNFTDGRYASLILGMNLTDVVITGNNGTIDGQGAPWWNKFAK GLLKATRPFLIEILHTTQLQITNITLTNSPSWHIHPIYCSNVVIQGLTILAPVKVPNTDGINPDSCINMRIEDVYIVSGDDCIAIKSGWDQYGIKYGMPT KQLVIRRLTCISPKSATIAIGSEMSGGIQDVRAEDITAFNTESAVRIKTAPGRGGYIKDIFVRRMTLKTMKYVFWVSGAYKTHVDDGYDPNALAEINNVN YMDVVAENVNITGSLSGFAKDPFTGFCISNATITLSETAKKLQWNCTDVQG | |||
| Full Sequence |
|---|
| Protein Sequence Length: 467 Download |
| ISKVFSILIL VGVLCLPSAE SRNVKVLKIK TSIEYPAISC RKHSAVLTEF GGVGDGKTLN 60 TKAFKSAIAN LSQYASDGGA QLIVPPGKWL TGSFNLTSHF TLFLHKGAVL LASQNEEDFP 120 LIDILPSYGR EQNFTDGRYA SLILGMNLTD VVITGNNGTI DGQGAPWWNK FAKGLLKATR 180 PFLIEILHTT QLQITNITLT NSPSWHIHPI YCSNVVIQGL TILAPVKVPN TDGINPDSCI 240 NMRIEDVYIV SGDDCIAIKS GWDQYGIKYG MPTKQLVIRR LTCISPKSAT IAIGSEMSGG 300 IQDVRAEDIT AFNTESAVRI KTAPGRGGYI KDIFVRRMTL KTMKYVFWVS GAYKTHVDDG 360 YDPNALAEIN NVNYMDVVAE NVNITGSLSG FAKDPFTGFC ISNATITLSE TAKKLQWNCT 420 DVQGVSNNVT PKPCDLLPQK DTRCSFPEEK LPIETIRMNT CSVKWF* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03010 | PLN03010 | 2.0e-17 | 4 | 428 | 436 | + polygalacturonase | ||
| PLN02218 | PLN02218 | 1.0e-18 | 22 | 406 | 405 | + polygalacturonase ADPG | ||
| PLN03003 | PLN03003 | 4.0e-22 | 47 | 431 | 401 | + Probable polygalacturonase At3g15720 | ||
| pfam00295 | Glyco_hydro_28 | 5.0e-25 | 143 | 422 | 288 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| COG5434 | PGU1 | 2.0e-55 | 45 | 341 | 320 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | NP_190464.1 | 0 | 1 | 461 | 2 | 467 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | XP_002278930.1 | 0 | 19 | 462 | 30 | 474 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002305262.1 | 0 | 33 | 462 | 2 | 434 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002327490.1 | 0 | 32 | 463 | 19 | 450 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002513653.1 | 0 | 1 | 463 | 12 | 471 | polygalacturonase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 3.00018e-42 | 28 | 334 | 13 | 342 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 3.00018e-42 | 28 | 334 | 13 | 342 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 3.00018e-42 | 28 | 334 | 13 | 342 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 3.00018e-42 | 28 | 334 | 13 | 342 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 1bhe_A | 0.00000000000003 | 89 | 380 | 52 | 336 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
