| Basic Information | |
|---|---|
| Species | Manihot esculenta |
| Cazyme ID | cassava4.1_026138m |
| Family | GH28 |
| Protein Properties | Length: 461 Molecular Weight: 50702.8 Isoelectric Point: 5.3719 |
| Chromosome | Chromosome/Scaffold: 07571 Start: 330026 End: 332602 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 67 | 411 | 0 |
| ADKGGAKLFVPAGQWLTGSFDLISHLTLWLDKDAVILGSTNSDDWPVVDPLPSYGRGRELPGKRHRSLIYGRNLTDVVITGDNGTIDGQGSNWWNWFHTK TLNYTRPHLVELMNSSGIVISNLTFINSPFWTIHPVYCSQVIVQNVTIRAPLDSPNTDGIDPDSSDDVCIEDCYISTGDDLIAIKSGWDEYGISYARPCR NIIIRRLVGQTRTSAGIAIGSEMSGGVSEVHAENIQFYNSNTGIRIKTSPGRGGYVRDIYISNITLTDVKIAIRFTGHYGEHPDEHYDPEALPTVERITI EDIAGDNIQYAGILEGIEGDSFLNICLSNITLNITSKSPWNCSYI | |||
| Full Sequence |
|---|
| Protein Sequence Length: 461 Download |
| PVGVLLVLAL FSHVPRLIKG SSPCKRANSA AIRPHSVSIT EFGAVGDGVT LNTKAFQNAI 60 FYLNSFADKG GAKLFVPAGQ WLTGSFDLIS HLTLWLDKDA VILGSTNSDD WPVVDPLPSY 120 GRGRELPGKR HRSLIYGRNL TDVVITGDNG TIDGQGSNWW NWFHTKTLNY TRPHLVELMN 180 SSGIVISNLT FINSPFWTIH PVYCSQVIVQ NVTIRAPLDS PNTDGIDPDS SDDVCIEDCY 240 ISTGDDLIAI KSGWDEYGIS YARPCRNIII RRLVGQTRTS AGIAIGSEMS GGVSEVHAEN 300 IQFYNSNTGI RIKTSPGRGG YVRDIYISNI TLTDVKIAIR FTGHYGEHPD EHYDPEALPT 360 VERITIEDIA GDNIQYAGIL EGIEGDSFLN ICLSNITLNI TSKSPWNCSY IQGYSDSVSP 420 ETCEPLRESI SPYHYSDCYN LSSHLLNSSN QNRGTWFLSW * 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03010 | PLN03010 | 3.0e-24 | 38 | 345 | 316 | + polygalacturonase | ||
| PLN02218 | PLN02218 | 1.0e-26 | 34 | 371 | 348 | + polygalacturonase ADPG | ||
| PLN03003 | PLN03003 | 7.0e-31 | 35 | 339 | 315 | + Probable polygalacturonase At3g15720 | ||
| pfam00295 | Glyco_hydro_28 | 4.0e-31 | 128 | 411 | 298 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| COG5434 | PGU1 | 7.0e-63 | 37 | 336 | 324 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CBI37055.1 | 0 | 11 | 460 | 17 | 466 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002273855.1 | 0 | 11 | 460 | 68 | 517 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002301554.1 | 0 | 11 | 440 | 17 | 445 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002320934.1 | 0 | 2 | 429 | 1 | 427 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002535132.1 | 0 | 11 | 460 | 27 | 476 | Polygalacturonase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 0 | 35 | 395 | 26 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 0 | 35 | 395 | 26 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 0 | 35 | 395 | 26 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 0 | 35 | 395 | 26 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 1bhe_A | 6e-21 | 81 | 411 | 52 | 372 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
