| Basic Information | |
|---|---|
| Species | Manihot esculenta |
| Cazyme ID | cassava4.1_026153m |
| Family | GH28 |
| Protein Properties | Length: 464 Molecular Weight: 51122.8 Isoelectric Point: 6.571 |
| Chromosome | Chromosome/Scaffold: 02242 Start: 152416 End: 155518 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 121 | 451 | 0 |
| EEACSSKGAVLVVPKNRYRVKPVRFSGPCKSNLTVQIYGVIEASDDRSDYKKDDRHWLVFDGVENLLVEGGGTIDGNGKIWWQNSCKVDKDLPCRDAPTA LTFYECKNLVVDNLKIQNAQQMHISFEGSKDVQVSNLSITSPEHSPNTDGIHVTRTQNIYITNSVIATGDDCISIVSGSQNVHAMDITCGPGHGISIGSL GSGKSRAYVSGVTIDGAKLSGTRNGVRIKTWQGGSGVARDIKFQNIEMQNVRNPIIIDQYYCDHKSCNEQRSAVEVKNVMYKNIKGSSASEVAIKFDCSK AYPCQGILLQDVILEREAEDQKAKALCYNVN | |||
| Full Sequence |
|---|
| Protein Sequence Length: 464 Download |
| MALQGLHLSP FFIILLLSII FVIIIPCYYC LPGDTLNHYL EEQGGEAFGY HYSQAYPSYF 60 SSIEDSQFKD FIKLRSSNVL NLKIFDKVGS TSTSVKTVNV DDYRANTDSA DDTKAFEKAW 120 EEACSSKGAV LVVPKNRYRV KPVRFSGPCK SNLTVQIYGV IEASDDRSDY KKDDRHWLVF 180 DGVENLLVEG GGTIDGNGKI WWQNSCKVDK DLPCRDAPTA LTFYECKNLV VDNLKIQNAQ 240 QMHISFEGSK DVQVSNLSIT SPEHSPNTDG IHVTRTQNIY ITNSVIATGD DCISIVSGSQ 300 NVHAMDITCG PGHGISIGSL GSGKSRAYVS GVTIDGAKLS GTRNGVRIKT WQGGSGVARD 360 IKFQNIEMQN VRNPIIIDQY YCDHKSCNEQ RSAVEVKNVM YKNIKGSSAS EVAIKFDCSK 420 AYPCQGILLQ DVILEREAED QKAKALCYNV NLVEKGVVSP HCP* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03003 | PLN03003 | 9.0e-74 | 93 | 450 | 367 | + Probable polygalacturonase At3g15720 | ||
| PLN02188 | PLN02188 | 2.0e-93 | 94 | 450 | 365 | + polygalacturonase/glycoside hydrolase family protein | ||
| pfam00295 | Glyco_hydro_28 | 2.0e-112 | 124 | 450 | 328 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02793 | PLN02793 | 3.0e-124 | 94 | 460 | 372 | + Probable polygalacturonase | ||
| PLN02218 | PLN02218 | 2.0e-150 | 64 | 462 | 405 | + polygalacturonase ADPG | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAF71160.1 | 0 | 1 | 463 | 1 | 456 | AF152758_1 polygalacturonase A [Actinidia chinensis] |
| Swiss-Prot | P35336 | 0 | 1 | 462 | 1 | 455 | PGLR_ACTDE RecName: Full=Polygalacturonase; Short=PG; AltName: Full=Pectinase; Flags: Precursor |
| RefSeq | XP_002308956.1 | 0 | 19 | 463 | 1 | 443 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002322711.1 | 0 | 28 | 462 | 22 | 452 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002529616.1 | 0 | 28 | 463 | 32 | 474 | Polygalacturonase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 1e-25 | 188 | 388 | 113 | 321 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1nhc_F | 2e-18 | 191 | 407 | 77 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 2e-18 | 191 | 407 | 77 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 2e-18 | 191 | 407 | 77 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_C | 2e-18 | 191 | 407 | 77 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
