Basic Information | |
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Species | Manihot esculenta |
Cazyme ID | cassava4.1_026195m |
Family | PL4 |
Protein Properties | Length: 622 Molecular Weight: 71521 Isoelectric Point: 5.696 |
Chromosome | Chromosome/Scaffold: 03787 Start: 15631 End: 18727 |
Description | Rhamnogalacturonate lyase family protein |
View CDS |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL4 | 1 | 601 | 0 |
MVIDNGFVQVTLSNPTGDITEIQYNEMGNVLEFHNGESNRGYWDIVWNKPGTRVAYDRLKGTNSSVIMEDENQVEVSFTRIWNASIGNYTAPLNVDKRYI VRRGSSGIYMYTTLERLEGWPDFDMDQIRIVFKLRSDKFHTMVISDDKQRVMPAVKDCRKGQRLAYPEAVLLTDPTNPNHKGEVDDKYQYSCENKDNRVH GWISEDPPVGFWVITPSDEFRAGGPLKQDLTSHVGPTALSMFTSTHYSGKDLDTRYRNGKPWKKVFGPVYVFINSISIDEDPLLLWEDAKEQMLVEVESW PYDFPESEDFPSSFQRGSVSGQLLIHDRYVNKRLTWAGSAYVGLAAPGDVGSWQRDSQGYQFWTRANKEGYFLIENVRAGEYNLYAWIPGIIGDWKFDGN ITVQSGYEIELGVLVYEPPRNGPTLWEIGVPDRTAAEFFIPDTYPTLQNKLYTNHPTDKFRQYGLWQRYTDMYPTQDLIYTIGISNYRQDWFFAQVPRNT RNKTFQATTWQIKYDLENVNQTASYTLRVALASASAAELQVRFNDPNRRRPHFTTGLIGRDNAIARHGIHGLYWLYNINVSGDLLGEKNNTIYLTQSRSK S |
Full Sequence |
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Protein Sequence Length: 622 Download |
MVIDNGFVQV TLSNPTGDIT EIQYNEMGNV LEFHNGESNR GYWDIVWNKP GTRVAYDRLK 60 GTNSSVIMED ENQVEVSFTR IWNASIGNYT APLNVDKRYI VRRGSSGIYM YTTLERLEGW 120 PDFDMDQIRI VFKLRSDKFH TMVISDDKQR VMPAVKDCRK GQRLAYPEAV LLTDPTNPNH 180 KGEVDDKYQY SCENKDNRVH GWISEDPPVG FWVITPSDEF RAGGPLKQDL TSHVGPTALS 240 MFTSTHYSGK DLDTRYRNGK PWKKVFGPVY VFINSISIDE DPLLLWEDAK EQMLVEVESW 300 PYDFPESEDF PSSFQRGSVS GQLLIHDRYV NKRLTWAGSA YVGLAAPGDV GSWQRDSQGY 360 QFWTRANKEG YFLIENVRAG EYNLYAWIPG IIGDWKFDGN ITVQSGYEIE LGVLVYEPPR 420 NGPTLWEIGV PDRTAAEFFI PDTYPTLQNK LYTNHPTDKF RQYGLWQRYT DMYPTQDLIY 480 TIGISNYRQD WFFAQVPRNT RNKTFQATTW QIKYDLENVN QTASYTLRVA LASASAAELQ 540 VRFNDPNRRR PHFTTGLIGR DNAIARHGIH GLYWLYNINV SGDLLGEKNN TIYLTQSRSK 600 SPFCGIMYDY IRFEGPSFTS T* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
cd10316 | RGL4_M | 2.0e-28 | 315 | 414 | 100 | + Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle domain represented by this model and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10317 | RGL4_C | 1.0e-50 | 426 | 614 | 191 | + C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10320 | RGL4_N | 1.0e-72 | 1 | 275 | 281 | + N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
pfam06045 | Rhamnogal_lyase | 2.0e-76 | 2 | 184 | 185 | + Rhamnogalacturonate lyase family. Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_002285626.1 | 0 | 3 | 616 | 1 | 615 | PREDICTED: hypothetical protein isoform 1 [Vitis vinifera] |
RefSeq | XP_002308510.1 | 0 | 1 | 619 | 57 | 674 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002319997.1 | 0 | 1 | 619 | 1 | 620 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002527229.1 | 0 | 1 | 617 | 54 | 668 | lyase, putative [Ricinus communis] |
RefSeq | XP_002527245.1 | 0 | 1 | 619 | 2 | 621 | lyase, putative [Ricinus communis] |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
DY969340 | 321 | 214 | 534 | 0 |
EH792178 | 287 | 289 | 573 | 0 |
GW864372 | 311 | 130 | 438 | 0 |
EL409069 | 272 | 337 | 608 | 0 |
GO374104 | 307 | 315 | 617 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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