| Basic Information | |
|---|---|
| Species | Manihot esculenta |
| Cazyme ID | cassava4.1_026297m |
| Family | GH28 |
| Protein Properties | Length: 394 Molecular Weight: 42030 Isoelectric Point: 8.3707 |
| Chromosome | Chromosome/Scaffold: 11456 Start: 113923 End: 115395 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 50 | 381 | 0 |
| AWKQVCSSTKPATMYVPPGKFLLRDMVFRGKCKNDGIIIRIDGTLVAPSDYHVIGHSENWLLFENVYGVSILGGIIDGQGTSLWNCKAHGKKCPRGATNL RFSNSNKIAIKGLMSLNSQIFHIVFHGCQNVEMEGVTVSASGESPNTDGIHVQMSSDVTIFNSKIGTGDDCISVGPGTSHLWIENIACGPGHGISIGSLG KQFREPGVQNVTVKTVTLTGTQNGLRIKSWARPSTGFARNILFQDAIMMDVKNPIVINQNYCPHSKNCPHKASGVKVSDVKYQNIHGTSATEVAVKFDCS EKDPCTGIKLENIDLTYKSQPANASCQNADGT | |||
| Full Sequence |
|---|
| Protein Sequence Length: 394 Download |
| MAFPMSPLVF ALIVVFFASS SLATSVTYSV LDYGAKPGGR TDSTQGFLAA WKQVCSSTKP 60 ATMYVPPGKF LLRDMVFRGK CKNDGIIIRI DGTLVAPSDY HVIGHSENWL LFENVYGVSI 120 LGGIIDGQGT SLWNCKAHGK KCPRGATNLR FSNSNKIAIK GLMSLNSQIF HIVFHGCQNV 180 EMEGVTVSAS GESPNTDGIH VQMSSDVTIF NSKIGTGDDC ISVGPGTSHL WIENIACGPG 240 HGISIGSLGK QFREPGVQNV TVKTVTLTGT QNGLRIKSWA RPSTGFARNI LFQDAIMMDV 300 KNPIVINQNY CPHSKNCPHK ASGVKVSDVK YQNIHGTSAT EVAVKFDCSE KDPCTGIKLE 360 NIDLTYKSQP ANASCQNADG TSSGSVQPAS CLV* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02793 | PLN02793 | 2.0e-91 | 30 | 392 | 372 | + Probable polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 2.0e-91 | 55 | 378 | 326 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02218 | PLN02218 | 2.0e-97 | 17 | 388 | 382 | + polygalacturonase ADPG | ||
| PLN02188 | PLN02188 | 1.0e-108 | 8 | 391 | 399 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN02155 | PLN02155 | 1.0e-137 | 7 | 392 | 387 | + polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAC64184.1 | 0 | 1 | 392 | 1 | 393 | endopolygalacturonase [Prunus persica] |
| GenBank | ABD33834.1 | 0 | 1 | 392 | 1 | 393 | polygalacturonase [Prunus domestica subsp. insititia] |
| GenBank | ABV32553.1 | 0 | 1 | 392 | 1 | 393 | endopolygalacturonase [Prunus persica] |
| RefSeq | XP_002529089.1 | 0 | 3 | 392 | 6 | 393 | Polygalacturonase precursor, putative [Ricinus communis] |
| RefSeq | XP_002529090.1 | 0 | 5 | 392 | 6 | 393 | Polygalacturonase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 1e-19 | 123 | 368 | 117 | 365 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1ib4_B | 0.000000000000003 | 125 | 337 | 84 | 294 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1ib4_A | 0.000000000000003 | 125 | 337 | 84 | 294 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1ia5_A | 0.000000000000003 | 125 | 337 | 84 | 294 | A Chain A, Polygalacturonase From Aspergillus Aculeatus |
| PDB | 1rmg_A | 0.00000000000007 | 18 | 381 | 11 | 356 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
