| Basic Information | |
|---|---|
| Species | Manihot esculenta |
| Cazyme ID | cassava4.1_026411m |
| Family | GH28 |
| Protein Properties | Length: 199 Molecular Weight: 21724.8 Isoelectric Point: 8.4879 |
| Chromosome | Chromosome/Scaffold: 01536 Start: 31811 End: 32504 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 9 | 188 | 0 |
| QSEQINIINSNIITDDDCISIGRGSRQVQITNVRCGLGHGISIGSLGKYEMEEPVSEIYVKNCTIYDTDNGVRIKTWPALHGGSVSNIHFEHIVMQTVSN PIIIDQMYCAHNLCNRKPSKVKISDVSFKNIRGSSRTPTADQLTCSSSVPCKNVELSNVNLRYTGSKGPANSVCTNVKPK | |||
| Full Sequence |
|---|
| Protein Sequence Length: 199 Download |
| MSDSSRLLQS EQINIINSNI ITDDDCISIG RGSRQVQITN VRCGLGHGIS IGSLGKYEME 60 EPVSEIYVKN CTIYDTDNGV RIKTWPALHG GSVSNIHFEH IVMQTVSNPI IIDQMYCAHN 120 LCNRKPSKVK ISDVSFKNIR GSSRTPTADQ LTCSSSVPCK NVELSNVNLR YTGSKGPANS 180 VCTNVKPKII EKLIPRGC* 240 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02218 | PLN02218 | 3.0e-23 | 32 | 188 | 157 | + polygalacturonase ADPG | ||
| PLN02155 | PLN02155 | 9.0e-29 | 30 | 198 | 171 | + polygalacturonase | ||
| PLN02793 | PLN02793 | 1.0e-29 | 33 | 173 | 143 | + Probable polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 9.0e-45 | 30 | 186 | 157 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02188 | PLN02188 | 7.0e-49 | 30 | 198 | 171 | + polygalacturonase/glycoside hydrolase family protein | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| DDBJ | BAA89476.1 | 0 | 2 | 198 | 196 | 393 | polygalacturonase [Salix gilgiana] |
| DDBJ | BAA89477.1 | 0 | 2 | 198 | 196 | 393 | polygalacturonase [Salix gilgiana] |
| DDBJ | BAA89478.1 | 0 | 2 | 198 | 196 | 393 | polygalacturonase [Salix gilgiana] |
| RefSeq | XP_002310765.1 | 0 | 2 | 198 | 194 | 391 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002329175.1 | 0 | 2 | 198 | 196 | 393 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2iq7_G | 0.0000000000004 | 2 | 185 | 154 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_F | 0.0000000000004 | 2 | 185 | 154 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_E | 0.0000000000004 | 2 | 185 | 154 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_D | 0.0000000000004 | 2 | 185 | 154 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_C | 0.0000000000004 | 2 | 185 | 154 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
| Hydropathy |
|---|
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| GW615660 | 172 | 30 | 199 | 0 |
| GW619150 | 166 | 30 | 193 | 0 |
| GW616557 | 142 | 60 | 199 | 0 |
| EE255668 | 172 | 30 | 199 | 0 |
| EE257565 | 172 | 30 | 199 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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