| Basic Information | |
|---|---|
| Species | Manihot esculenta |
| Cazyme ID | cassava4.1_026469m |
| Family | GH28 |
| Protein Properties | Length: 401 Molecular Weight: 43380.1 Isoelectric Point: 4.9426 |
| Chromosome | Chromosome/Scaffold: 04796 Start: 485664 End: 487467 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 69 | 386 | 0 |
| MLQIPDGTFLLKPLQFQGPCVSNSIHIQLLGKILAPSTIKRKWWILFTEVNGLILDGSGSIDGQGSLWWNKGVRRRHKRPRALQFHRCDNLELSGLTHIN SPKGHMGLNYCNGVSISNLTITAPQDSPNTDGIDISYSSQVNIFNSTIATGDDCIAINGGCSYININNVKCGPGHGISVGSLGDKGEMDLVEEVHVQNCT FIGTENGARIKTWPGGSGYARKISFEQIILQGTKNPIIIDQYYCNGHQCSLQELSERAAVKVSEIKYSGISGTSESQQGITLNCAELGCTNITMEEINIT SSEPGEEIYAYCQNANGT | |||
| Full Sequence |
|---|
| Protein Sequence Length: 401 Download |
| MQKVQLLTII FIFISSIVSN LAIGDATSTF NVVDFGAIGD GETDNSKAFL QAWKALCEAE 60 EDEYGGMPML QIPDGTFLLK PLQFQGPCVS NSIHIQLLGK ILAPSTIKRK WWILFTEVNG 120 LILDGSGSID GQGSLWWNKG VRRRHKRPRA LQFHRCDNLE LSGLTHINSP KGHMGLNYCN 180 GVSISNLTIT APQDSPNTDG IDISYSSQVN IFNSTIATGD DCIAINGGCS YININNVKCG 240 PGHGISVGSL GDKGEMDLVE EVHVQNCTFI GTENGARIKT WPGGSGYARK ISFEQIILQG 300 TKNPIIIDQY YCNGHQCSLQ ELSERAAVKV SEIKYSGISG TSESQQGITL NCAELGCTNI 360 TMEEINITSS EPGEEIYAYC QNANGTSSFT FPQVPCLLGF * 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam00295 | Glyco_hydro_28 | 2.0e-92 | 70 | 383 | 320 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02188 | PLN02188 | 1.0e-92 | 19 | 396 | 391 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN02793 | PLN02793 | 4.0e-96 | 30 | 397 | 381 | + Probable polygalacturonase | ||
| PLN03003 | PLN03003 | 9.0e-119 | 21 | 397 | 387 | + Probable polygalacturonase At3g15720 | ||
| PLN03010 | PLN03010 | 3.0e-124 | 30 | 388 | 367 | + polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CBI36306.1 | 0 | 6 | 398 | 100 | 494 | unnamed protein product [Vitis vinifera] |
| EMBL | CBI36306.1 | 0.000002 | 322 | 392 | 18 | 88 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002324855.1 | 0 | 4 | 397 | 1 | 394 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002515526.1 | 0 | 1 | 399 | 1 | 394 | Polygalacturonase-2 precursor, putative [Ricinus communis] |
| RefSeq | XP_002515527.1 | 0 | 1 | 392 | 1 | 347 | polygalacturonase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1nhc_F | 4e-24 | 129 | 382 | 80 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 4e-24 | 129 | 382 | 80 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 4e-24 | 129 | 382 | 80 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_C | 4e-24 | 129 | 382 | 80 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_B | 4e-24 | 129 | 382 | 80 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
