| Basic Information | |
|---|---|
| Species | Manihot esculenta |
| Cazyme ID | cassava4.1_026560m |
| Family | GH28 |
| Protein Properties | Length: 319 Molecular Weight: 35228.4 Isoelectric Point: 9.4717 |
| Chromosome | Chromosome/Scaffold: 12599 Start: 27 End: 1162 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 2 | 308 | 0 |
| HLQVEGTLVAPAKASQHRKNSWVTLRYLDRLTISGGRAFDGQGEIAWQRKSCGGGCKKALSVVRKSECYFTHQRFDFVTNSIVEDVTSIDSKQFHVNLLG SKNLTFQRFSVKALGHSPNTDGIHIGRSEEINIINSNIITGDDCISIGLGSRQVRITNVRCRHGHGISIGSLGKYEKEEPVFGIYVKNCTIYDTDNGVRI KTWPSLQCGSVSNIHFEDIVMQNVSNPIIIDQMYCPHNECNRKMPSKVKISDVIFKNIRGSSRTPTAVQLTCSSSVPCKNVELSNVNLQYTGSKGPAKSI CTNVKPK | |||
| Full Sequence |
|---|
| Protein Sequence Length: 319 Download |
| MHLQVEGTLV APAKASQHRK NSWVTLRYLD RLTISGGRAF DGQGEIAWQR KSCGGGCKKA 60 LSVVRKSECY FTHQRFDFVT NSIVEDVTSI DSKQFHVNLL GSKNLTFQRF SVKALGHSPN 120 TDGIHIGRSE EINIINSNII TGDDCISIGL GSRQVRITNV RCRHGHGISI GSLGKYEKEE 180 PVFGIYVKNC TIYDTDNGVR IKTWPSLQCG SVSNIHFEDI VMQNVSNPII IDQMYCPHNE 240 CNRKMPSKVK ISDVIFKNIR GSSRTPTAVQ LTCSSSVPCK NVELSNVNLQ YTGSKGPAKS 300 ICTNVKPKII EKLIPRGC* 360 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02218 | PLN02218 | 1.0e-52 | 3 | 304 | 309 | + polygalacturonase ADPG | ||
| PLN02155 | PLN02155 | 7.0e-60 | 3 | 318 | 318 | + polygalacturonase | ||
| PLN02793 | PLN02793 | 2.0e-60 | 3 | 302 | 312 | + Probable polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 1.0e-94 | 3 | 306 | 305 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02188 | PLN02188 | 2.0e-95 | 7 | 318 | 314 | + polygalacturonase/glycoside hydrolase family protein | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| DDBJ | BAA89476.1 | 0 | 1 | 318 | 84 | 393 | polygalacturonase [Salix gilgiana] |
| DDBJ | BAA89477.1 | 0 | 1 | 318 | 84 | 393 | polygalacturonase [Salix gilgiana] |
| DDBJ | BAA89478.1 | 0 | 1 | 318 | 84 | 393 | polygalacturonase [Salix gilgiana] |
| RefSeq | XP_002329175.1 | 0 | 1 | 318 | 84 | 393 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002526191.1 | 0 | 1 | 318 | 83 | 392 | Polygalacturonase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1ib4_B | 7e-19 | 32 | 305 | 74 | 333 | A Chain A, Structure Of Ugt78g1 Complexed With Myricetin And Udp |
| PDB | 1ib4_A | 7e-19 | 32 | 305 | 74 | 333 | A Chain A, Structure Of Ugt78g1 Complexed With Myricetin And Udp |
| PDB | 1ia5_A | 7e-19 | 32 | 305 | 74 | 333 | A Chain A, Polygalacturonase From Aspergillus Aculeatus |
| PDB | 1bhe_A | 7e-19 | 34 | 289 | 113 | 361 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 2iq7_G | 1e-16 | 37 | 305 | 77 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
| Hydropathy |
|---|
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| EE257565 | 237 | 84 | 319 | 0 |
| GW611463 | 242 | 40 | 279 | 0 |
| GR453460 | 245 | 75 | 318 | 0 |
| GR455947 | 271 | 23 | 292 | 0 |
| EC944002 | 257 | 28 | 284 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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