| Basic Information | |
|---|---|
| Species | Manihot esculenta |
| Cazyme ID | cassava4.1_026609m |
| Family | GH28 |
| Protein Properties | Length: 395 Molecular Weight: 41398.3 Isoelectric Point: 5.8451 |
| Chromosome | Chromosome/Scaffold: 09161 Start: 53862 End: 55323 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 53 | 384 | 0 |
| WAQVCGSSEPASLYVPSGRFSLGKVTFQGPCKNSAILVTIDGTLVAPSDYSAIGQEKNWLMFEHVDGVTVSGGILDGQGTALWSCKASRKSCPSGATSIE FSNSNNIEINGLASQDSQKFHIVINGCKNVKVHDVKVSAAGNSPNTDGIHVEQSTGVTILNSKIGTGDDCVSIGPGTTNLWIENVACGPGHGISIGSLGK ELEEDGVQYVTVKSCTFSGTENGVRIKSWGRPSNGFARNILFQHAVMTNVQNPILIDQNYCPDDKNCPNQQSGIKISDVTYQDIHGSSATEVAVKLDCSK KNPCTGIELEDVKLTYNNRPAEASCTNAAGTV | |||
| Full Sequence |
|---|
| Protein Sequence Length: 395 Download |
| MAHTLSFLAF TLFSIFLASS SPSIAGSAQY SVQSYGAKPD GTTDSTKAFL AAWAQVCGSS 60 EPASLYVPSG RFSLGKVTFQ GPCKNSAILV TIDGTLVAPS DYSAIGQEKN WLMFEHVDGV 120 TVSGGILDGQ GTALWSCKAS RKSCPSGATS IEFSNSNNIE INGLASQDSQ KFHIVINGCK 180 NVKVHDVKVS AAGNSPNTDG IHVEQSTGVT ILNSKIGTGD DCVSIGPGTT NLWIENVACG 240 PGHGISIGSL GKELEEDGVQ YVTVKSCTFS GTENGVRIKS WGRPSNGFAR NILFQHAVMT 300 NVQNPILIDQ NYCPDDKNCP NQQSGIKISD VTYQDIHGSS ATEVAVKLDC SKKNPCTGIE 360 LEDVKLTYNN RPAEASCTNA AGTVSGFVQP SSCL* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02218 | PLN02218 | 4.0e-91 | 31 | 390 | 367 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 7.0e-92 | 32 | 394 | 372 | + Probable polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 1.0e-93 | 57 | 380 | 327 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02188 | PLN02188 | 7.0e-110 | 5 | 393 | 399 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN02155 | PLN02155 | 7.0e-142 | 4 | 394 | 392 | + polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | XP_002309716.1 | 0 | 8 | 394 | 6 | 391 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002310385.1 | 0 | 8 | 394 | 12 | 397 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002331621.1 | 0 | 11 | 394 | 14 | 396 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002529090.1 | 0 | 9 | 394 | 8 | 393 | Polygalacturonase precursor, putative [Ricinus communis] |
| RefSeq | XP_002529092.1 | 0 | 1 | 394 | 1 | 394 | Polygalacturonase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 1e-19 | 125 | 367 | 117 | 362 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1rmg_A | 2e-16 | 32 | 366 | 23 | 338 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
| PDB | 1czf_B | 0.000000000000001 | 115 | 377 | 95 | 362 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
| PDB | 1czf_A | 0.000000000000001 | 115 | 377 | 95 | 362 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
| PDB | 1hg8_A | 0.00000000000004 | 123 | 367 | 77 | 332 | A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
