y
Basic Information | |
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Species | Manihot esculenta |
Cazyme ID | cassava4.1_026629m |
Family | GH28 |
Protein Properties | Length: 384 Molecular Weight: 40215.7 Isoelectric Point: 8.3668 |
Chromosome | Chromosome/Scaffold: 06780 Start: 94816 End: 96300 |
Description | Pectin lyase-like superfamily protein |
View CDS |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 51 | 381 | 0 |
WTQACASTKSADIYVPKGSFFLRKVAFQGPCKNSAIVLRIDGTLVAPSDYRVIGSSGNWIIFEHVRGVTVSGGTLDGKGTGLWSCKASGKNCPVGATSLE FTNSNNIVISGLASLNSQMFHIVINECQNVKMQGLKIMASGESPNTDGIHVEASTGVTILNSKISTGDDCVSIGPGTSNLWVQNVVCGPGHGISIGSLGK DLQESGVQNVTVTGTTFSGTENGVRIKTWGRPSKSFVRSIVFQHLVMNNVQNPIIIDQNYCPNNNNCPGQASGVKISGVTYLDIHGSSATETAVKLDCSK KNPCSGIRLKGINLTYKNRPAEASCNNASGA |
Full Sequence |
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Protein Sequence Length: 384 Download |
MADQLNPTLQ VLVLISLTSS LAMGAVQYNV LNYGAKPDGN TDSTMAFLAA WTQACASTKS 60 ADIYVPKGSF FLRKVAFQGP CKNSAIVLRI DGTLVAPSDY RVIGSSGNWI IFEHVRGVTV 120 SGGTLDGKGT GLWSCKASGK NCPVGATSLE FTNSNNIVIS GLASLNSQMF HIVINECQNV 180 KMQGLKIMAS GESPNTDGIH VEASTGVTIL NSKISTGDDC VSIGPGTSNL WVQNVVCGPG 240 HGISIGSLGK DLQESGVQNV TVTGTTFSGT ENGVRIKTWG RPSKSFVRSI VFQHLVMNNV 300 QNPIIIDQNY CPNNNNCPGQ ASGVKISGVT YLDIHGSSAT ETAVKLDCSK KNPCSGIRLK 360 GINLTYKNRP AEASCNNASG ACL* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam00295 | Glyco_hydro_28 | 5.0e-90 | 55 | 382 | 332 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 2.0e-90 | 11 | 379 | 379 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 8.0e-92 | 30 | 381 | 360 | + Probable polygalacturonase | ||
PLN02188 | PLN02188 | 8.0e-113 | 28 | 378 | 358 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02155 | PLN02155 | 2.0e-142 | 11 | 383 | 374 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_002309716.1 | 0 | 9 | 380 | 8 | 379 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002309718.1 | 0 | 1 | 380 | 1 | 380 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002310385.1 | 0 | 7 | 380 | 11 | 385 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002529090.1 | 0 | 1 | 380 | 1 | 381 | Polygalacturonase precursor, putative [Ricinus communis] |
RefSeq | XP_002529091.1 | 0 | 1 | 380 | 1 | 380 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 2e-18 | 123 | 365 | 117 | 362 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 2iq7_G | 9e-17 | 121 | 374 | 76 | 329 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 9e-17 | 121 | 374 | 76 | 329 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 9e-17 | 121 | 374 | 76 | 329 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_D | 9e-17 | 121 | 374 | 76 | 329 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |