| Basic Information | |
|---|---|
| Species | Manihot esculenta |
| Cazyme ID | cassava4.1_026691m |
| Family | GH28 |
| Protein Properties | Length: 440 Molecular Weight: 48106.4 Isoelectric Point: 8.8281 |
| Chromosome | Chromosome/Scaffold: 00341 Start: 447348 End: 449111 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 46 | 395 | 0 |
| ASDGGAQLLVPPGKWLTGSFNLTSHFTLFLQKGAVLLASQNEADFPIIDPLPSYGREKNFTAGRFASLILGMNLTDVVITGENGTIDGQGAPWWDKYKKG LFKASRPFLIELMYTNRLQISNVTLINSPSWHLHPIYCRNVVIQWLTILAPVQVPNTDGINPDSCANVRIEDIFIVSGDDCIAVKSGWDEYGIKVGMPTK HLIVRRLTCISPHSATIAIGSEMSGGVQDVRAEDIAAFNTESAVRIKTAPGRGGYVKDIFVRRMTLKTMKYVFWVSGGYKSHPDDGYDPNAFPKINNINY IDVVAENVNITGSLDGLPNDPFTGICIFNATITLSGTAKKVQWNCTHVQG | |||
| Full Sequence |
|---|
| Protein Sequence Length: 440 Download |
| ETTIKYAAIS CRKHTAVLTE FGGVGDGKTL NTKAFKSAIA NLSNYASDGG AQLLVPPGKW 60 LTGSFNLTSH FTLFLQKGAV LLASQNEADF PIIDPLPSYG REKNFTAGRF ASLILGMNLT 120 DVVITGENGT IDGQGAPWWD KYKKGLFKAS RPFLIELMYT NRLQISNVTL INSPSWHLHP 180 IYCRNVVIQW LTILAPVQVP NTDGINPDSC ANVRIEDIFI VSGDDCIAVK SGWDEYGIKV 240 GMPTKHLIVR RLTCISPHSA TIAIGSEMSG GVQDVRAEDI AAFNTESAVR IKTAPGRGGY 300 VKDIFVRRMT LKTMKYVFWV SGGYKSHPDD GYDPNAFPKI NNINYIDVVA ENVNITGSLD 360 GLPNDPFTGI CIFNATITLS GTAKKVQWNC THVQGVSNNV TPKPCDLLPE KATRCSFPKD 420 KLRIERVHMK TCSVKKICL* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03010 | PLN03010 | 2.0e-20 | 20 | 354 | 348 | + polygalacturonase | ||
| PLN02218 | PLN02218 | 2.0e-22 | 15 | 315 | 309 | + polygalacturonase ADPG | ||
| PLN03003 | PLN03003 | 1.0e-28 | 18 | 402 | 404 | + Probable polygalacturonase At3g15720 | ||
| pfam00295 | Glyco_hydro_28 | 7.0e-30 | 114 | 348 | 240 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| COG5434 | PGU1 | 3.0e-57 | 16 | 312 | 320 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACU17976.1 | 0 | 4 | 437 | 41 | 474 | unknown [Glycine max] |
| RefSeq | NP_190464.1 | 0 | 4 | 432 | 33 | 467 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | XP_002327490.1 | 0 | 3 | 433 | 19 | 449 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002509850.1 | 0 | 4 | 436 | 41 | 477 | polygalacturonase, putative [Ricinus communis] |
| RefSeq | XP_002513653.1 | 0 | 3 | 433 | 40 | 470 | polygalacturonase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 1.99965e-42 | 18 | 377 | 30 | 410 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 1.99965e-42 | 18 | 377 | 30 | 410 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 1.99965e-42 | 18 | 377 | 30 | 410 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 1.99965e-42 | 18 | 377 | 30 | 410 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 2uvf_B | 1e-18 | 7 | 417 | 148 | 582 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
| Hydropathy |
|---|
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| DY257045 | 327 | 59 | 385 | 0 |
| DW138823 | 316 | 34 | 349 | 0 |
| FC906391 | 300 | 6 | 305 | 0 |
| DY294251 | 300 | 6 | 305 | 0 |
| DY294251 | 47 | 305 | 351 | 0.0000002 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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