| Basic Information | |
|---|---|
| Species | Manihot esculenta |
| Cazyme ID | cassava4.1_026722m |
| Family | CE8 |
| Protein Properties | Length: 292 Molecular Weight: 32913.3 Isoelectric Point: 8.8268 |
| Chromosome | Chromosome/Scaffold: 01551 Start: 3330244 End: 3331484 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CE8 | 3 | 283 | 0 |
| NGDGDFTSIQEAINAVPENNSQWIIIHVRKGVYREKVHIPKNKPYIFMRGNGKGKTALVWSMSSIDNKESATFTVESPHFIAFGISFKNEAPTGIAFTSQ NQSVAAFVGADKIAFYNCAFYSTHNTLFDYKGRHYYYKCYIQGSIDFIFGRARSIFQSCEIFVLVDMRVKILGSITAQNRESDDNSGFVFVKGKVYGIGN VYLGRARGAYSRTVFAKTYLSNSITAKGWTNWSCVGSTEHIFQAEYKCYGPGAYTIARAPWSKQLTEEEAERFMSIDFIDG | |||
| Full Sequence |
|---|
| Protein Sequence Length: 292 Download |
| DLNGDGDFTS IQEAINAVPE NNSQWIIIHV RKGVYREKVH IPKNKPYIFM RGNGKGKTAL 60 VWSMSSIDNK ESATFTVESP HFIAFGISFK NEAPTGIAFT SQNQSVAAFV GADKIAFYNC 120 AFYSTHNTLF DYKGRHYYYK CYIQGSIDFI FGRARSIFQS CEIFVLVDMR VKILGSITAQ 180 NRESDDNSGF VFVKGKVYGI GNVYLGRARG AYSRTVFAKT YLSNSITAKG WTNWSCVGST 240 EHIFQAEYKC YGPGAYTIAR APWSKQLTEE EAERFMSIDF IDGQQWLPIW M* 300 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02665 | PLN02665 | 1.0e-81 | 2 | 287 | 290 | + pectinesterase family protein | ||
| PLN02497 | PLN02497 | 5.0e-87 | 1 | 287 | 291 | + probable pectinesterase | ||
| PLN02432 | PLN02432 | 9.0e-89 | 1 | 287 | 288 | + putative pectinesterase | ||
| PLN02682 | PLN02682 | 3.0e-98 | 4 | 289 | 296 | + pectinesterase family protein | ||
| PLN02480 | PLN02480 | 0 | 1 | 291 | 291 | + Probable pectinesterase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0005618 | cell wall |
| GO:0030599 | pectinesterase activity |
| GO:0042545 | cell wall modification |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACU23222.1 | 0 | 1 | 291 | 55 | 346 | unknown [Glycine max] |
| RefSeq | NP_188331.1 | 0 | 1 | 291 | 49 | 340 | pectinesterase family protein [Arabidopsis thaliana] |
| RefSeq | XP_002272939.1 | 0 | 1 | 291 | 57 | 348 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002311381.1 | 0 | 1 | 290 | 52 | 341 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002523016.1 | 0 | 1 | 291 | 60 | 350 | Pectinesterase-2 precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1gq8_A | 4.06377e-44 | 3 | 287 | 14 | 308 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 1xg2_A | 7e-34 | 3 | 287 | 10 | 304 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 2ntq_B | 0.00000000000001 | 8 | 288 | 18 | 339 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 2ntq_A | 0.00000000000001 | 8 | 288 | 18 | 339 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 2ntp_B | 0.00000000000001 | 8 | 288 | 18 | 339 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| GR458872 | 284 | 1 | 283 | 0 |
| ES902377 | 275 | 15 | 288 | 0 |
| CO115605 | 245 | 1 | 244 | 0 |
| JG076116 | 241 | 50 | 290 | 0 |
| DY022435 | 256 | 1 | 255 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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