| Basic Information | |
|---|---|
| Species | Manihot esculenta |
| Cazyme ID | cassava4.1_027193m |
| Family | CE8 |
| Protein Properties | Length: 365 Molecular Weight: 39980.2 Isoelectric Point: 10.0407 |
| Chromosome | Chromosome/Scaffold: 00386 Start: 27215 End: 28711 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CE8 | 72 | 354 | 0 |
| ISKDGKGDFRTLTDAIKSIPSGNKQRVIMKIGPGVYTEKITIDMNKPFITFLGAPNAMPTLAFGGTALEYGTVDSASVMVLSDYFMATYIIFKNTAPGPN SKKPGAQAVALRISGDKATFYNCRMLGFQDTLLDERGRHFFKNCYIEGTVDFIFGSGKSLYLETEIHVIDNKGAFITAQAKTKKSEDYGYSFVQCKITGK GSGTYLGRAWKTMPEVVFSYTKMGAVVNPLGWSNNNIPERDSTVFFGEYKNSGPGAAPKRRVKFTKQLTDREAKRFISLGYIQ | |||
| Full Sequence |
|---|
| Protein Sequence Length: 365 Download |
| MTKEHFVSAQ CVLIIILIVA PTVSSDDTTP IPADDAKVRN WFQTNVKPLA SRKGTLDPAL 60 VAAEGKPKII KISKDGKGDF RTLTDAIKSI PSGNKQRVIM KIGPGVYTEK ITIDMNKPFI 120 TFLGAPNAMP TLAFGGTALE YGTVDSASVM VLSDYFMATY IIFKNTAPGP NSKKPGAQAV 180 ALRISGDKAT FYNCRMLGFQ DTLLDERGRH FFKNCYIEGT VDFIFGSGKS LYLETEIHVI 240 DNKGAFITAQ AKTKKSEDYG YSFVQCKITG KGSGTYLGRA WKTMPEVVFS YTKMGAVVNP 300 LGWSNNNIPE RDSTVFFGEY KNSGPGAAPK RRVKFTKQLT DREAKRFISL GYIQGSKWLL 360 PPPL* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02304 | PLN02304 | 1.0e-82 | 79 | 361 | 293 | + probable pectinesterase | ||
| PLN02671 | PLN02671 | 1.0e-86 | 79 | 359 | 295 | + pectinesterase | ||
| PLN02432 | PLN02432 | 6.0e-90 | 79 | 359 | 283 | + putative pectinesterase | ||
| PLN02682 | PLN02682 | 7.0e-109 | 79 | 361 | 290 | + pectinesterase family protein | ||
| PLN02665 | PLN02665 | 0 | 5 | 363 | 361 | + pectinesterase family protein | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0005618 | cell wall |
| GO:0030599 | pectinesterase activity |
| GO:0042545 | cell wall modification |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | XP_002309337.1 | 0 | 1 | 363 | 1 | 367 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002318197.1 | 0 | 10 | 363 | 8 | 363 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002333446.1 | 0 | 10 | 363 | 9 | 364 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002511045.1 | 0 | 12 | 363 | 14 | 365 | Pectinesterase-1 precursor, putative [Ricinus communis] |
| RefSeq | XP_002530224.1 | 0 | 10 | 363 | 12 | 366 | Pectinesterase U1 precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1gq8_A | 4.2039e-45 | 67 | 359 | 7 | 308 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 1xg2_A | 2e-39 | 72 | 359 | 7 | 304 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 1qjv_B | 6e-23 | 69 | 347 | 8 | 328 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| PDB | 1qjv_A | 6e-23 | 69 | 347 | 8 | 328 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| PDB | 2ntq_B | 2e-22 | 69 | 347 | 8 | 328 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |
