y
Basic Information | |
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Species | Manihot esculenta |
Cazyme ID | cassava4.1_027197m |
Family | CE8 |
Protein Properties | Length: 340 Molecular Weight: 38175.5 Isoelectric Point: 9.8459 |
Chromosome | Chromosome/Scaffold: 02421 Start: 479508 End: 480887 |
Description | Pectin lyase-like superfamily protein |
View CDS |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 47 | 329 | 0 |
ILVDQSGNGNFTSVQSAIDSIPSNNKRWFCIYIKGGIYREKVKIPYDKPYIILKGEGKRKTQIVWGDYFSTAQSPTFTSLADNTVAKSISFVNSHNFLNK NNPVVPAVAAMISGDRSAFYRCNFAGVQDTLWDDNGRHYFKECTIQGAVDFIFGSGQSLYEGCIIKVVGGGFITAQGRNNPKDTNGFVFKDCKIVGKAPA TSPVYLGRPWREYSRVIFYKCYFSKIIDPKGWNPWHFVGEEDRTTYAEYGNYGPGAVSKQRVSWVKKLGSKDIDGLTSLSFIN |
Full Sequence |
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Protein Sequence Length: 340 Download |
MKMLLQWVSC LWLTLLMGSS HVESANGKLH SSVHWHRNFR SLKYVAILVD QSGNGNFTSV 60 QSAIDSIPSN NKRWFCIYIK GGIYREKVKI PYDKPYIILK GEGKRKTQIV WGDYFSTAQS 120 PTFTSLADNT VAKSISFVNS HNFLNKNNPV VPAVAAMISG DRSAFYRCNF AGVQDTLWDD 180 NGRHYFKECT IQGAVDFIFG SGQSLYEGCI IKVVGGGFIT AQGRNNPKDT NGFVFKDCKI 240 VGKAPATSPV YLGRPWREYS RVIFYKCYFS KIIDPKGWNP WHFVGEEDRT TYAEYGNYGP 300 GAVSKQRVSW VKKLGSKDID GLTSLSFINS GNWIQRQPV* 360 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02665 | PLN02665 | 8.0e-81 | 47 | 334 | 294 | + pectinesterase family protein | ||
PLN02480 | PLN02480 | 2.0e-86 | 47 | 334 | 295 | + Probable pectinesterase | ||
PLN02432 | PLN02432 | 2.0e-89 | 45 | 335 | 293 | + putative pectinesterase | ||
PLN02176 | PLN02176 | 2.0e-101 | 30 | 339 | 319 | + putative pectinesterase | ||
PLN02497 | PLN02497 | 8.0e-176 | 1 | 339 | 348 | + probable pectinesterase |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI40838.1 | 0 | 41 | 338 | 39 | 341 | unnamed protein product [Vitis vinifera] |
RefSeq | NP_189055.1 | 0 | 47 | 339 | 34 | 333 | pectinesterase family protein [Arabidopsis thaliana] |
RefSeq | XP_002263748.1 | 0 | 6 | 338 | 5 | 328 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002323773.1 | 0 | 47 | 339 | 1 | 289 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002518106.1 | 0 | 1 | 339 | 1 | 336 | Pectinesterase U1 precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 0 | 47 | 335 | 9 | 309 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 4.00001e-40 | 48 | 310 | 6 | 277 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_B | 7e-18 | 44 | 307 | 4 | 317 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_A | 7e-18 | 44 | 307 | 4 | 317 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntp_B | 7e-18 | 44 | 307 | 4 | 317 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |