| Basic Information | |
|---|---|
| Species | Manihot esculenta |
| Cazyme ID | cassava4.1_027248m |
| Family | GH28 |
| Protein Properties | Length: 438 Molecular Weight: 48090.1 Isoelectric Point: 9.4352 |
| Chromosome | Chromosome/Scaffold: 11106 Start: 598066 End: 600835 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 93 | 425 | 0 |
| EKACSSKQTAIIIVPKNKIYHLKPLTFSGPCRSDLSFKIYGTIKASLKMRDYEDDRRHWIVFDNVQNLRVKGGGIINGNGRMWWRNSCKINKSKPCKHAP TAVTFIDCKNLIVSNLWFKNAQQMHLTFQNCINVRALNLMVTAPGNSPNTDGIHVTGTQNIRIRNSVIRTGDDCISIVSGSKNVEATDIICGPGHGISIG SLGAGNSGAEVSNVLVNRATFSGTTNGVRIKTWQGGSGYAKNIIFQNLIMKNVSNPIIIDQNYCDQDDPCPEKKSAVQVSNVIYRSIKGTSASEVAMKFD CSESFPCQGILLQDIILGNVEDEPAKASCLNVN | |||
| Full Sequence |
|---|
| Protein Sequence Length: 438 Download |
| MIPQHPPKHL LILFIVLTFF TCCFGSYQQN PFANFHENVH KMISKPAFSS FSKQTRASSS 60 TTSSSKIVLI NVDDFGAKAN GRDDSEAFKK AWEKACSSKQ TAIIIVPKNK IYHLKPLTFS 120 GPCRSDLSFK IYGTIKASLK MRDYEDDRRH WIVFDNVQNL RVKGGGIING NGRMWWRNSC 180 KINKSKPCKH APTAVTFIDC KNLIVSNLWF KNAQQMHLTF QNCINVRALN LMVTAPGNSP 240 NTDGIHVTGT QNIRIRNSVI RTGDDCISIV SGSKNVEATD IICGPGHGIS IGSLGAGNSG 300 AEVSNVLVNR ATFSGTTNGV RIKTWQGGSG YAKNIIFQNL IMKNVSNPII IDQNYCDQDD 360 PCPEKKSAVQ VSNVIYRSIK GTSASEVAMK FDCSESFPCQ GILLQDIILG NVEDEPAKAS 420 CLNVNLAHRG KVYPQCS* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02155 | PLN02155 | 2.0e-93 | 68 | 434 | 369 | + polygalacturonase | ||
| PLN02188 | PLN02188 | 2.0e-98 | 69 | 434 | 373 | + polygalacturonase/glycoside hydrolase family protein | ||
| pfam00295 | Glyco_hydro_28 | 4.0e-118 | 96 | 424 | 329 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02793 | PLN02793 | 2.0e-148 | 69 | 434 | 368 | + Probable polygalacturonase | ||
| PLN02218 | PLN02218 | 1.0e-155 | 70 | 437 | 371 | + polygalacturonase ADPG | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAC26512.1 | 0 | 10 | 436 | 16 | 458 | polygalacturonase precursor [Cucumis melo] |
| GenBank | ACV85696.1 | 0 | 8 | 436 | 11 | 441 | ripening-induced polygalacturonase 3 [Carica papaya] |
| Swiss-Prot | P35336 | 0 | 70 | 436 | 90 | 455 | PGLR_ACTDE RecName: Full=Polygalacturonase; Short=PG; AltName: Full=Pectinase; Flags: Precursor |
| RefSeq | XP_002313308.1 | 0 | 63 | 437 | 4 | 376 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002517823.1 | 0 | 1 | 436 | 1 | 446 | Polygalacturonase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 2e-22 | 159 | 355 | 110 | 314 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1hg8_A | 2e-16 | 134 | 404 | 46 | 326 | A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme |
| PDB | 1nhc_F | 4e-16 | 165 | 421 | 77 | 336 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 4e-16 | 165 | 421 | 77 | 336 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 4e-16 | 165 | 421 | 77 | 336 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
