Basic Information | |
---|---|
Species | Manihot esculenta |
Cazyme ID | cassava4.1_027290m |
Family | GH28 |
Protein Properties | Length: 408 Molecular Weight: 44095.6 Isoelectric Point: 9.976 |
Chromosome | Chromosome/Scaffold: 01551 Start: 2890796 End: 2892417 |
Description | Pectin lyase-like superfamily protein |
View CDS |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
GH28 | 66 | 395 | 0 |
WNAACNWKGKARVLVPKGAFVASSMVFGGPCKNKAPTVFQLVGTLKAVSNLSSYAEDFWMIFRNVNGLVITGTGTVDGQGPNVWKYNDHGDGGRVFPASI KFHRVRDGVIRQVSSVNPMGFHIGIVLSKNITAKSLHLTAPEDSPNTDGFHISQSNQVKIATSVIATGDDCVGMIQGSTDISIKEVTCGPGHGISIGSLG KYPDEKDVKGILVTNCTLRNTENGIRIKTWAGSPPSQATALTFQDIVMHNVRNPIIIDQSYGSNSNKPSKVRISDVKYINIKGTTSSEVGVNFECSKQFP CQRVHLANIKLEYTGDKKQALSATCQNARV |
Full Sequence |
---|
Protein Sequence Length: 408 Download |
MAMAITKKLL PNAILLFCVA LASCDKRSSI RPGRRRYSNE KIFNVVQFGA KTDPEKDNAL 60 AFIQAWNAAC NWKGKARVLV PKGAFVASSM VFGGPCKNKA PTVFQLVGTL KAVSNLSSYA 120 EDFWMIFRNV NGLVITGTGT VDGQGPNVWK YNDHGDGGRV FPASIKFHRV RDGVIRQVSS 180 VNPMGFHIGI VLSKNITAKS LHLTAPEDSP NTDGFHISQS NQVKIATSVI ATGDDCVGMI 240 QGSTDISIKE VTCGPGHGIS IGSLGKYPDE KDVKGILVTN CTLRNTENGI RIKTWAGSPP 300 SQATALTFQD IVMHNVRNPI IIDQSYGSNS NKPSKVRISD VKYINIKGTT SSEVGVNFEC 360 SKQFPCQRVH LANIKLEYTG DKKQALSATC QNARVSYAGI QFPPPCR* |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 1.0e-78 | 27 | 403 | 387 | + polygalacturonase ADPG | ||
PLN02155 | PLN02155 | 2.0e-80 | 38 | 406 | 374 | + polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 1.0e-85 | 78 | 396 | 323 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 8.0e-94 | 32 | 406 | 388 | + Probable polygalacturonase | ||
PLN02188 | PLN02188 | 9.0e-129 | 36 | 406 | 379 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_002272193.1 | 0 | 3 | 407 | 1 | 427 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002314372.1 | 0 | 39 | 407 | 45 | 410 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002315493.1 | 0 | 47 | 407 | 18 | 375 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002334010.1 | 0 | 31 | 407 | 35 | 408 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002516967.1 | 0 | 1 | 407 | 1 | 412 | Exopolygalacturonase clone GBGE184 precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1nhc_F | 4e-17 | 141 | 349 | 80 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 4e-17 | 141 | 349 | 80 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 4e-17 | 141 | 349 | 80 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 4e-17 | 141 | 349 | 80 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_B | 4e-17 | 141 | 349 | 80 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |