| Basic Information | |
|---|---|
| Species | Manihot esculenta |
| Cazyme ID | cassava4.1_027487m |
| Family | GH28 |
| Protein Properties | Length: 300 Molecular Weight: 32349.9 Isoelectric Point: 10.113 |
| Chromosome | Chromosome/Scaffold: 04124 Start: 23003 End: 24161 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 57 | 298 | 0 |
| KGACGAAGSDKVVIPKGKYSLGVALARVPIYSSGRNVVAPAKASQHCKNSWVTLRYLDRLTVSGGGAFDGQGEIAWQRKSCGSGCKKALPVKLRFDFITN SIVEDVTSIDSKQFHVNLLGSKNLTFQRFSVKAPGHSPNTDGIHIGRSEEINIINSNIITGDDCISIGRGSRQVRITNVRCGHGHGIGIGSLGKYEKEEP VSGIYVKNCTIYDTDNGVRIKTWPALHGGSVSNIHFKDIVVT | |||
| Full Sequence |
|---|
| Protein Sequence Length: 300 Download |
| MHKHLEINIG CRYRKRGSAL KRDIWVPSGA QPNTFDVTKY GAKEGSDITK ALLSAWKGAC 60 GAAGSDKVVI PKGKYSLGVA LARVPIYSSG RNVVAPAKAS QHCKNSWVTL RYLDRLTVSG 120 GGAFDGQGEI AWQRKSCGSG CKKALPVKLR FDFITNSIVE DVTSIDSKQF HVNLLGSKNL 180 TFQRFSVKAP GHSPNTDGIH IGRSEEINII NSNIITGDDC ISIGRGSRQV RITNVRCGHG 240 HGIGIGSLGK YEKEEPVSGI YVKNCTIYDT DNGVRIKTWP ALHGGSVSNI HFKDIVVTT* 300 360 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02218 | PLN02218 | 6.0e-37 | 32 | 295 | 280 | + polygalacturonase ADPG | ||
| PLN02155 | PLN02155 | 3.0e-39 | 28 | 297 | 278 | + polygalacturonase | ||
| PLN02793 | PLN02793 | 2.0e-41 | 35 | 295 | 279 | + Probable polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 2.0e-59 | 60 | 298 | 244 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02188 | PLN02188 | 5.0e-67 | 26 | 297 | 281 | + polygalacturonase/glycoside hydrolase family protein | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| DDBJ | BAA89476.1 | 0 | 30 | 297 | 25 | 297 | polygalacturonase [Salix gilgiana] |
| DDBJ | BAA89477.1 | 0 | 30 | 297 | 25 | 297 | polygalacturonase [Salix gilgiana] |
| DDBJ | BAA89478.1 | 0 | 30 | 297 | 25 | 297 | polygalacturonase [Salix gilgiana] |
| RefSeq | XP_002329175.1 | 0 | 30 | 297 | 25 | 297 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002333303.1 | 0 | 30 | 297 | 25 | 297 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 0.0000000000004 | 118 | 297 | 113 | 301 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1ib4_B | 0.0000000000004 | 116 | 299 | 74 | 258 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1ib4_A | 0.0000000000004 | 116 | 299 | 74 | 258 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1ia5_A | 0.0000000000004 | 116 | 299 | 74 | 258 | A Chain A, Polygalacturonase From Aspergillus Aculeatus |
| PDB | 2iq7_G | 0.0000000008 | 189 | 298 | 149 | 253 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
| Hydropathy |
|---|
 |
| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| CU617067 | 278 | 30 | 297 | 0 |
| EE255197 | 269 | 35 | 295 | 0 |
| EC987202 | 271 | 35 | 297 | 0 |
| EE255351 | 269 | 35 | 295 | 0 |
| EC941822 | 271 | 35 | 297 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
|---|
 |
