y
Basic Information | |
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Species | Manihot esculenta |
Cazyme ID | cassava4.1_027590m |
Family | GH28 |
Protein Properties | Length: 379 Molecular Weight: 41206.2 Isoelectric Point: 9.0124 |
Chromosome | Chromosome/Scaffold: 10060 Start: 17981 End: 19444 |
Description | Pectin lyase-like superfamily protein |
View CDS |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 45 | 376 | 0 |
KKEACSAKGSNRIVVPKGTYSIGLTDLNGPCKGAMELQVQGTLLAPINPSKYAKDSWITFAYIDRFKLSGGETFNGQGQVAWKQNNCGRNPKCKRLPVSL RFDFITNSVVQDVTSLDSKNFHVNVLGGKNLTFDRFTITAPGDSVNIDGIHIGHSNGINIINSNITTGDDCISIGGASEQIRITNLRCGHGHGISMGSSG KTTDEFVSGIFVRNCTFYDTDNGVRIKTWPALQDGMASDMHFEDIMMKNVRNPIVIYQVYCPWNQCNPKLPSKVKIANVTFKNIRGSSAIAVAVRLNCSS SFPCQKVELADINLMYRGKEGPAKSLCANVKP |
Full Sequence |
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Protein Sequence Length: 379 Download |
MTTLETYFSL ASLLLLFVFD GRVQSAVFDV KNYGGKADGK LDISKKEACS AKGSNRIVVP 60 KGTYSIGLTD LNGPCKGAME LQVQGTLLAP INPSKYAKDS WITFAYIDRF KLSGGETFNG 120 QGQVAWKQNN CGRNPKCKRL PVSLRFDFIT NSVVQDVTSL DSKNFHVNVL GGKNLTFDRF 180 TITAPGDSVN IDGIHIGHSN GINIINSNIT TGDDCISIGG ASEQIRITNL RCGHGHGISM 240 GSSGKTTDEF VSGIFVRNCT FYDTDNGVRI KTWPALQDGM ASDMHFEDIM MKNVRNPIVI 300 YQVYCPWNQC NPKLPSKVKI ANVTFKNIRG SSAIAVAVRL NCSSSFPCQK VELADINLMY 360 RGKEGPAKSL CANVKPTL* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 1.0e-53 | 30 | 375 | 359 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 1.0e-55 | 27 | 371 | 359 | + Probable polygalacturonase | ||
PLN02155 | PLN02155 | 2.0e-57 | 25 | 373 | 357 | + polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 5.0e-92 | 49 | 375 | 328 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 2.0e-95 | 25 | 375 | 362 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAA89476.1 | 0 | 26 | 378 | 29 | 384 | polygalacturonase [Salix gilgiana] |
DDBJ | BAA89477.1 | 0 | 26 | 378 | 29 | 384 | polygalacturonase [Salix gilgiana] |
DDBJ | BAA89478.1 | 0 | 26 | 378 | 29 | 384 | polygalacturonase [Salix gilgiana] |
DDBJ | BAA89479.1 | 0 | 26 | 378 | 29 | 384 | polygalacturonase [Salix gilgiana] |
RefSeq | XP_002329175.1 | 0 | 12 | 378 | 14 | 384 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 3e-16 | 99 | 358 | 100 | 361 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1ib4_B | 0.00000000000005 | 115 | 374 | 81 | 333 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1ib4_A | 0.00000000000005 | 115 | 374 | 81 | 333 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1ia5_A | 0.00000000000005 | 115 | 374 | 81 | 333 | A Chain A, Polygalacturonase From Aspergillus Aculeatus |
PDB | 2iq7_G | 0.0000000000004 | 38 | 374 | 7 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |