Basic Information | |
---|---|
Species | Manihot esculenta |
Cazyme ID | cassava4.1_027889m |
Family | GH28 |
Protein Properties | Length: 362 Molecular Weight: 39183 Isoelectric Point: 8.9715 |
Chromosome | Chromosome/Scaffold: 04124 Start: 3200 End: 4578 |
Description | Pectin lyase-like superfamily protein |
View CDS |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
GH28 | 49 | 361 | 0 |
KGACGAADSGKVVIPKGKYSLGVVDLLGPCKGAIHLQVEGTLVAPTKASQHRKNSWVTLRYLDRLMVSSGGAFDGQGEIAWQRKSCCGGCKKALPVNLRF DFVTNSIVEDVTSIDSKQFHVNLLGSKNLTFQRFSVKAPGHTPNMDGIHIGWSEEINIINSNIITSDDCISIGRGSRQVRITNVRCGHGHGISIRSLGKY EKEEPVSGIYVKNCTIYETDNGVRIKTWPALHGGSVSNIHFEDIVMQNVSNPIIIDQMCCPHNECNRKMPSKVKISDVIFKNIRGSSRTPTAVQLTCSSS VPCKNVELSNVNL |
Full Sequence |
---|
Protein Sequence Length: 362 Download |
MGSKVHVCAA YLVLLFAFTS GAQPNTFDVT KYGAKEGSDI TKALLSAWKG ACGAADSGKV 60 VIPKGKYSLG VVDLLGPCKG AIHLQVEGTL VAPTKASQHR KNSWVTLRYL DRLMVSSGGA 120 FDGQGEIAWQ RKSCCGGCKK ALPVNLRFDF VTNSIVEDVT SIDSKQFHVN LLGSKNLTFQ 180 RFSVKAPGHT PNMDGIHIGW SEEINIINSN IITSDDCISI GRGSRQVRIT NVRCGHGHGI 240 SIRSLGKYEK EEPVSGIYVK NCTIYETDNG VRIKTWPALH GGSVSNIHFE DIVMQNVSNP 300 IIIDQMCCPH NECNRKMPSK VKISDVIFKN IRGSSRTPTA VQLTCSSSVP CKNVELSNVN 360 L* |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 8.0e-64 | 16 | 361 | 356 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 3.0e-66 | 27 | 361 | 347 | + Probable polygalacturonase | ||
PLN02155 | PLN02155 | 7.0e-70 | 11 | 361 | 354 | + polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 3.0e-94 | 52 | 361 | 310 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 2.0e-103 | 5 | 361 | 366 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAA89476.1 | 0 | 1 | 361 | 1 | 364 | polygalacturonase [Salix gilgiana] |
DDBJ | BAA89477.1 | 0 | 17 | 361 | 20 | 364 | polygalacturonase [Salix gilgiana] |
DDBJ | BAA89478.1 | 0 | 17 | 361 | 20 | 364 | polygalacturonase [Salix gilgiana] |
RefSeq | XP_002310765.1 | 0 | 1 | 361 | 1 | 362 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002329175.1 | 0 | 12 | 361 | 15 | 364 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 6e-17 | 119 | 361 | 117 | 361 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1ib4_B | 0.000000000000001 | 58 | 347 | 46 | 308 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1ib4_A | 0.000000000000001 | 58 | 347 | 46 | 308 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1ia5_A | 0.000000000000001 | 58 | 347 | 46 | 308 | A Chain A, Polygalacturonase From Aspergillus Aculeatus |
PDB | 1rmg_A | 0.0000000000001 | 14 | 361 | 9 | 338 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
Metabolic Pathways | |||
---|---|---|---|
Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |