y
Basic Information | |
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Species | Manihot esculenta |
Cazyme ID | cassava4.1_027894m |
Family | GH28 |
Protein Properties | Length: 393 Molecular Weight: 41883.7 Isoelectric Point: 8.929 |
Chromosome | Chromosome/Scaffold: 07729 Start: 66684 End: 68146 |
Description | Pectin lyase-like superfamily protein |
View CDS |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 52 | 380 | 0 |
IQACGSVRPATVYVPAGRFFLRNIVFQGPCKNGAIFFRIVGTLVAPSDYRVIGNAGNWLLFQFVNGVTVYGGVLDGQGPALWACKASGRNCPTGATSLAF SNSNNIAISRLISLNSQMFHIVINGCHNVKVQGVTVSASGNSPNTDGIHVQLSSSVAILNSWIGTGDDCISIGAGTSNMWIERVACGPGHGISIGSLGKE LQEPGVENVIVKSVVFTGTQNGLRIKSWARPSNGFVRNIRFRDAVMKNVQNPIIIDQNYCPNNINCPNQESGIKVSDITYHGIWGSSATPVAVKFDCSRK SPCTGIYLGDVNLTYRNQPSEASCKNADG |
Full Sequence |
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Protein Sequence Length: 393 Download |
MGRQHSFPFL VAILTYLFTS SLSNAAHYNV LYYGAKPDGR TDSTKAFLAA WIQACGSVRP 60 ATVYVPAGRF FLRNIVFQGP CKNGAIFFRI VGTLVAPSDY RVIGNAGNWL LFQFVNGVTV 120 YGGVLDGQGP ALWACKASGR NCPTGATSLA FSNSNNIAIS RLISLNSQMF HIVINGCHNV 180 KVQGVTVSAS GNSPNTDGIH VQLSSSVAIL NSWIGTGDDC ISIGAGTSNM WIERVACGPG 240 HGISIGSLGK ELQEPGVENV IVKSVVFTGT QNGLRIKSWA RPSNGFVRNI RFRDAVMKNV 300 QNPIIIDQNY CPNNINCPNQ ESGIKVSDIT YHGIWGSSAT PVAVKFDCSR KSPCTGIYLG 360 DVNLTYRNQP SEASCKNADG VAIGFVQPSS CL* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 4.0e-91 | 20 | 388 | 379 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 4.0e-94 | 33 | 392 | 368 | + Probable polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 4.0e-95 | 55 | 378 | 326 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 1.0e-111 | 9 | 391 | 399 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02155 | PLN02155 | 2.0e-150 | 6 | 392 | 388 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAC64184.1 | 0 | 1 | 392 | 1 | 393 | endopolygalacturonase [Prunus persica] |
GenBank | ABD33834.1 | 0 | 1 | 392 | 1 | 393 | polygalacturonase [Prunus domestica subsp. insititia] |
RefSeq | XP_002309718.1 | 0 | 9 | 392 | 9 | 392 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002529089.1 | 0 | 3 | 392 | 4 | 393 | Polygalacturonase precursor, putative [Ricinus communis] |
RefSeq | XP_002529090.1 | 0 | 3 | 392 | 5 | 393 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 2e-19 | 120 | 351 | 113 | 350 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1rmg_A | 0.0000000000002 | 29 | 380 | 22 | 355 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
PDB | 1hg8_A | 0.000000000006 | 122 | 356 | 78 | 323 | A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme |
PDB | 1nhc_F | 0.00000000001 | 122 | 375 | 77 | 336 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 0.00000000001 | 122 | 375 | 77 | 336 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |