| Basic Information | |
|---|---|
| Species | Manihot esculenta |
| Cazyme ID | cassava4.1_027933m |
| Family | GH28 |
| Protein Properties | Length: 98 Molecular Weight: 10484.3 Isoelectric Point: 10.3797 |
| Chromosome | Chromosome/Scaffold: 11102 Start: 8 End: 443 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 1 | 87 | 8.5e-25 |
| MQNVSNPIIIDQMYCPWNLCNRKKPSKVQIGDVSFKNIRGSSRTPTAVQITCSSSVPCKDIVLSNVNLKYTGSKGSAKSVCTNVKPR | |||
| Full Sequence |
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| Protein Sequence Length: 98 Download |
| MQNVSNPIII DQMYCPWNLC NRKKPSKVQI GDVSFKNIRG SSRTPTAVQI TCSSSVPCKD 60 IVLSNVNLKY TGSKGSAKSV CTNVKPRIIG KLIPGGC* 120 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02218 | PLN02218 | 3.0e-15 | 1 | 94 | 94 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 1.0e-15 | 1 | 97 | 98 | + Probable polygalacturonase | ||
| PLN02155 | PLN02155 | 9.0e-17 | 1 | 97 | 98 | + polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 8.0e-22 | 1 | 85 | 85 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02188 | PLN02188 | 1.0e-31 | 1 | 97 | 97 | + polygalacturonase/glycoside hydrolase family protein | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| DDBJ | BAA89476.1 | 5e-34 | 1 | 97 | 297 | 393 | polygalacturonase [Salix gilgiana] |
| DDBJ | BAA89477.1 | 4e-34 | 1 | 97 | 297 | 393 | polygalacturonase [Salix gilgiana] |
| DDBJ | BAA89478.1 | 3e-32 | 1 | 97 | 297 | 393 | polygalacturonase [Salix gilgiana] |
| RefSeq | XP_002310765.1 | 4e-36 | 1 | 97 | 295 | 391 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002329173.1 | 2e-32 | 1 | 97 | 57 | 153 | predicted protein [Populus trichocarpa] |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
| Hydropathy |
|---|
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| GW616557 | 99 | 1 | 98 | 6e-33 |
| GW615660 | 99 | 1 | 98 | 6e-33 |
| EE256886 | 97 | 1 | 97 | 2e-32 |
| GW619150 | 93 | 1 | 92 | 2e-30 |
| BJ568882 | 97 | 1 | 97 | 7e-30 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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