| Basic Information | |
|---|---|
| Species | Manihot esculenta |
| Cazyme ID | cassava4.1_028098m |
| Family | GT5 |
| Protein Properties | Length: 657 Molecular Weight: 73319 Isoelectric Point: 6.4466 |
| Chromosome | Chromosome/Scaffold: 11581 Start: 1418409 End: 1424029 |
| Description | starch synthase 2 |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GT5 | 166 | 649 | 0 |
| NIILVAAECAPWSKTGGLGDVAGSLPKALARRGHRVMVVAPRYHNYAEPQYTGVPKVYKVDGQDFEVTYFQAFIDGVDFVFIESPIFRHLENNIYGGNRV DVLKRMVLFCKAAVEVPWHVPCGGVCYGDGNLAFIANDWHTALLPVYLKAYYRDKGFMHYARSVLVIHNIAHQGRGPVDDFRYMDLPGHYIDLFKLYDPV GGEHSNILAAGLKTADRLVTVSHGYAWELKTSEGGWGLHNIINENGWKMSGIVNGIDAKEWNPQFDVHLTLDGYTNYSLETLDTGKPQCKAALQKELGLP VRPDVPVIGFIGRLDHQKGVDLIAEAIPWMIDQDVQLVMLGTGRHDLEEMLRNFECRHSDKVRGWVGFSVQTSHRITAGADILLMPSRFEPCGLNQLYAM TYGTVPVVHAVGGLRDTVQPFDPFSESGLGWTFDSAEKNKLIHALWNCLLTYRQYKKSWEGLQRRGMTQDLSWDHAAAKYEDVL | |||
| Full Sequence |
|---|
| Protein Sequence Length: 657 Download |
| KSKKVLARQG DLRQQIAKRR NLVSSIKCSS FDHEIDRTSH EQRDSSLPDS ESTSTSDVNI 60 LQHQNNNVLP SGYVHSPADE VPEISPSAIS GGYAKDEMEH GQRISPKTSS SIKNLTKEFK 120 DMEMKSENEI IEGSAESTLP KVDNVENDTM TEDAKSVPLA GAHAMNIILV AAECAPWSKT 180 GGLGDVAGSL PKALARRGHR VMVVAPRYHN YAEPQYTGVP KVYKVDGQDF EVTYFQAFID 240 GVDFVFIESP IFRHLENNIY GGNRVDVLKR MVLFCKAAVE VPWHVPCGGV CYGDGNLAFI 300 ANDWHTALLP VYLKAYYRDK GFMHYARSVL VIHNIAHQGR GPVDDFRYMD LPGHYIDLFK 360 LYDPVGGEHS NILAAGLKTA DRLVTVSHGY AWELKTSEGG WGLHNIINEN GWKMSGIVNG 420 IDAKEWNPQF DVHLTLDGYT NYSLETLDTG KPQCKAALQK ELGLPVRPDV PVIGFIGRLD 480 HQKGVDLIAE AIPWMIDQDV QLVMLGTGRH DLEEMLRNFE CRHSDKVRGW VGFSVQTSHR 540 ITAGADILLM PSRFEPCGLN QLYAMTYGTV PVVHAVGGLR DTVQPFDPFS ESGLGWTFDS 600 AEKNKLIHAL WNCLLTYRQY KKSWEGLQRR GMTQDLSWDH AAAKYEDVLV AAKYQW* 660 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PRK14099 | PRK14099 | 2.0e-84 | 164 | 645 | 523 | + glycogen synthase; Provisional | ||
| COG0297 | GlgA | 2.0e-133 | 165 | 647 | 497 | + Glycogen synthase [Carbohydrate transport and metabolism] | ||
| PRK00654 | glgA | 6.0e-168 | 165 | 648 | 493 | + glycogen synthase; Provisional | ||
| TIGR02095 | glgA | 0 | 165 | 652 | 492 | + glycogen/starch synthase, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate [Energy metabolism, Biosynthesis and degradation of polysaccharides]. | ||
| cd03791 | GT1_Glycogen_synthase_DULL1_like | 0 | 166 | 649 | 495 | + This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0009058 | biosynthetic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAF13168.1 | 0 | 1 | 656 | 78 | 751 | AF173900_1 granule bound starch synthase II precursor [Manihot esculenta] |
| GenBank | ABV25894.1 | 0 | 1 | 656 | 78 | 751 | starch synthase isoform II [Manihot esculenta] |
| RefSeq | XP_002278470.1 | 0 | 1 | 656 | 98 | 772 | PREDICTED: similar to starch synthase [Vitis vinifera] |
| RefSeq | XP_002324061.1 | 0 | 1 | 656 | 82 | 742 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002531856.1 | 0 | 1 | 656 | 82 | 754 | starch synthase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3vuf_A | 0 | 165 | 650 | 10 | 509 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 3vue_A | 0 | 165 | 650 | 10 | 509 | A Chain A, Crystal Structure Of Rice Granule Bound Starch Synthase I Catalytic Domain |
| PDB | 1rzv_B | 0 | 165 | 645 | 1 | 468 | A Chain A, Crystal Structure Of The Glycogen Synthase From Agrobacterium Tumefaciens (Non-Complexed Form) |
| PDB | 1rzv_A | 0 | 165 | 645 | 1 | 468 | A Chain A, Crystal Structure Of The Glycogen Synthase From Agrobacterium Tumefaciens (Non-Complexed Form) |
| PDB | 1rzu_B | 0 | 165 | 645 | 1 | 468 | A Chain A, Crystal Structure Of The Glycogen Synthase From A. Tumefaciens In Complex With Adp |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| starch biosynthesis | GLYCOGENSYN-RXN | EC-2.4.1.21 | starch synthase |
| Hydropathy |
|---|
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| HO777841 | 319 | 339 | 657 | 0 |
| HO777841 | 354 | 1 | 346 | 0 |
| HO781048 | 395 | 263 | 657 | 0 |
| HO445868 | 435 | 223 | 657 | 0 |
| HO781048 | 41 | 224 | 264 | 0.003 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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