y
Basic Information | |
---|---|
Species | Manihot esculenta |
Cazyme ID | cassava4.1_028252m |
Family | CE8 |
Protein Properties | Length: 240 Molecular Weight: 26647.2 Isoelectric Point: 9.0099 |
Chromosome | Chromosome/Scaffold: 00571 Start: 19962 End: 23059 |
Description | Pectin lyase-like superfamily protein |
View CDS |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
CE8 | 27 | 229 | 0 |
CDTTTIPTNDSQNTAPKPQSNKPGGQAVALRINGDKAAFYNCKFLGFQDTLCDDRGHHFYRNCYIEGTVDFIFGRGRSLYLESHLNVVDNKDLTFITAQG KEEKSENFGYSFVQCKITGSGSGSFLGRAWRKIPQVIFSYTEMGAVVNPLGWSDNRQPDRDSTVFFAEYKNSGPGLNHKGRVKFTKQLKDAQAKNFLSLG YIQ |
Full Sequence |
---|
Protein Sequence Length: 240 Download |
MTRGQCIGAT HYVHIVILVV ATVVNCCDTT TIPTNDSQNT APKPQSNKPG GQAVALRING 60 DKAAFYNCKF LGFQDTLCDD RGHHFYRNCY IEGTVDFIFG RGRSLYLESH LNVVDNKDLT 120 FITAQGKEEK SENFGYSFVQ CKITGSGSGS FLGRAWRKIP QVIFSYTEMG AVVNPLGWSD 180 NRQPDRDSTV FFAEYKNSGP GLNHKGRVKF TKQLKDAQAK NFLSLGYIQD SKWLLPPPK* 240 300 |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02671 | PLN02671 | 2.0e-57 | 49 | 234 | 186 | + pectinesterase | ||
PLN02304 | PLN02304 | 9.0e-63 | 39 | 236 | 205 | + probable pectinesterase | ||
PLN02432 | PLN02432 | 1.0e-65 | 50 | 234 | 185 | + putative pectinesterase | ||
PLN02682 | PLN02682 | 3.0e-78 | 38 | 236 | 199 | + pectinesterase family protein | ||
PLN02665 | PLN02665 | 2.0e-127 | 38 | 239 | 202 | + pectinesterase family protein |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN78808.1 | 0 | 39 | 239 | 139 | 340 | hypothetical protein [Vitis vinifera] |
RefSeq | XP_002511043.1 | 0 | 38 | 238 | 165 | 364 | Pectinesterase-1 precursor, putative [Ricinus communis] |
RefSeq | XP_002511044.1 | 0 | 38 | 238 | 166 | 365 | Pectinesterase-3 precursor, putative [Ricinus communis] |
RefSeq | XP_002511045.1 | 0 | 38 | 238 | 166 | 365 | Pectinesterase-1 precursor, putative [Ricinus communis] |
RefSeq | XP_002530224.1 | 0 | 38 | 239 | 167 | 367 | Pectinesterase U1 precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 2e-24 | 52 | 234 | 113 | 308 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 5e-24 | 38 | 234 | 100 | 304 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 3uw0_A | 0.0000000002 | 52 | 215 | 155 | 350 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 2ntq_B | 0.0000000003 | 52 | 236 | 129 | 342 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 2ntq_A | 0.0000000003 | 52 | 236 | 129 | 342 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
Metabolic Pathways | |||
---|---|---|---|
Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |