| Basic Information | |
|---|---|
| Species | Manihot esculenta |
| Cazyme ID | cassava4.1_028328m |
| Family | GH28 |
| Protein Properties | Length: 111 Molecular Weight: 12343.6 Isoelectric Point: 9.8407 |
| Chromosome | Chromosome/Scaffold: 06875 Start: 430195 End: 430640 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GH28 | 6 | 99 | 3.1e-26 |
| SMHFEDIMMKNVCNPIVIDQVYCPWNQCNPKLFSKVKIANVTFKNIRGSSATVVAIRLNCSSSFPCKKVKLADIYLTYRGKEGPAKSLCANVKP | |||
| Full Sequence |
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| Protein Sequence Length: 111 Download |
| FDNRESMHFE DIMMKNVCNP IVIDQVYCPW NQCNPKLFSK VKIANVTFKN IRGSSATVVA 60 IRLNCSSSFP CKKVKLADIY LTYRGKEGPA KSLCANVKPT LKGKLIPTIC * 120 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02218 | PLN02218 | 6.0e-17 | 9 | 107 | 99 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 1.0e-19 | 9 | 110 | 103 | + Probable polygalacturonase | ||
| PLN02155 | PLN02155 | 1.0e-26 | 6 | 110 | 105 | + polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 4.0e-28 | 7 | 98 | 92 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02188 | PLN02188 | 1.0e-31 | 7 | 110 | 104 | + polygalacturonase/glycoside hydrolase family protein | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| DDBJ | BAA89476.1 | 6e-39 | 5 | 110 | 288 | 393 | polygalacturonase [Salix gilgiana] |
| DDBJ | BAA89478.1 | 1e-39 | 7 | 110 | 290 | 393 | polygalacturonase [Salix gilgiana] |
| RefSeq | XP_002310765.1 | 2e-39 | 7 | 110 | 288 | 391 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002329173.1 | 5.99994e-41 | 5 | 110 | 48 | 153 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002329175.1 | 6e-39 | 5 | 110 | 288 | 393 | predicted protein [Populus trichocarpa] |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
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| Hit | Length | Start | End | EValue |
| GW615660 | 107 | 6 | 111 | 1e-37 |
| GW616557 | 107 | 6 | 111 | 2e-37 |
| CO111175 | 104 | 7 | 110 | 3e-37 |
| FG202877 | 104 | 7 | 110 | 3e-37 |
| CO109692 | 104 | 7 | 110 | 5e-37 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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